Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00002 ATGGGTATGATGGCTATGGCGTTGCCGAAATGTAGAATTGGTCCTCGATTGGTGGCGGTGGGTGCCGGTGGATTGAGTTCGTCCTGCTCATACCTGCCCCCAACTGTCTGCCGCACATCTGCACCCTTTCTTTTAGCTCTTTCCTTCGTCTTTCATATACCCTCCCTTCCACAACTCAAACCGGCCCCTGTGCAGCATTCTTGTACAACAGCCAATCGTCGAGGAATCATGGCAGACGAAGTTCAGAATGATGTGAATGATCAGGTGGCAGATATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCTGGCTGATGAGTCTGTTGACAAGTTAGCAGAGAAAACCGAAAGTTTGTCAGTTTCTGATGGTCTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCTATTTCCTTGACTGACGATGGTGCCGATGCTACGGAGGATTTGGAAGATCAAGCGGGGGAGAACGAAGATCAAGACGGAATTACTTTACAGTATCGTTATCCTTGGGAAGGAAGCGATCGTGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAACATTCTTAGAGAGAATAATCCAGAGCTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTCTGTAAAACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTATTAGCCGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCCATTAAAGCTGGTTTTGTTGCTCGTGTCGGCCGGAGGAACGCTGGGACATGA 1041 45.82 MGMMAMALPKCRIGPRLVAVGAGGLSSSCSYLPPTVCRTSAPFLLALSFVFHIPSLPQLKPAPVQHSCTTANRRGIMADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDLADESVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEAISLTDDGADATEDLEDQAGENEDQDGITLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35205 43295 + CmoCh13G000020.1 Cmo13g00002 394057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00002 346 Pfam Domain found in IF2B/IF5 216 324 IPR002735 GO:0003743|GO:0006413
Cmo13g00002 346 PANTHER BNAA02G05130D PROTEIN 77 343 - -
Cmo13g00002 346 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 295 330 IPR016190 GO:0003743|GO:0006413
Cmo13g00002 346 SMART eIF2Bneu4 216 325 IPR002735 GO:0003743|GO:0006413
Cmo13g00002 346 Gene3D - 189 331 - -
Cmo13g00002 346 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 77 343 IPR045196 GO:0003743|GO:0006413
Cmo13g00002 346 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 191 298 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00505 Cmo-Chr5:2433298 Cmo13g00002 Cmo-Chr13:35205 8.48E-08 transposed
Cmo01g00766 Cmo-Chr1:3956036 Cmo13g00002 Cmo-Chr13:35205 5.55E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00002 K03238 - csv:101220978 509.22