Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00017 ATGGCTTCTTCTTCCGGGAGCTTAGACACCTCCGGGAATTCCCATCCCTCTTTCACTTTCTCCAGTCATCCTTTTATGACTACTTCTTACTCTGACCTTCTCGCCTCCGGCATCGACGATCCTCCTTCCTCCGCCACACCCCACGGTTCTCTCCGGAGTTCCACTACCGGCGTTCCTAAATTCAAATCCCTCCCTCCTCCCTCTCTGCCTCTCTCTCCTTCTTCCTTTTTCGCCATTCCTCCTGGCTTGAGTCCGGCCGAGCTTCTCGATTCTCCTGTTCTTCTCAGTGCTTCTCATCCTCTGCCGTCGCCGACTACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAACAATTATGGTTATAATCAGCAGAGCATTAAAGAAGAAAACAAATATCTGTCCAACTTCTCATTTCAAACTCAATCGTCAAAGCCGCCGCCTTCGTCTTTTCAGCCTTCCTCCACCACAGCTCCGATGAGTTGGAGTTTTCAAGAACAGGGCAAGAAACAGGACGGTTTTTCGTCGGAGAATAATATGGTGAAGCAGAGCTTCTCACCGGAATACGGGATTGTTCAAAACCAGAGCCAAATCAACGGCGGTGGGCAGTTGCAGTCCGACTACGGCAACAATTACCCGCAACAATCTCAGACGGTGAATCGGAGGTCCGACGACGGATACAATTGGAGAAAATACGGCCAGAAACAGGTCAAGGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAGTTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCACCCGAAGCCCCAATCCACGAGAAGGTCGTCGCTGTCATCCGCCGGTTCTTCCCTATCCATGGTGGTTTCGAATCCGGCCGCCAACGAGATGGCGGACCAGTCATTTACAACTCAAAGCAGCGCCCAATTCGACGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATCGGCGACGACGACTTCGATCGTAGCTCTCAGAAGAGCAAATCCGGAGGGGACGACTATGATGAAGTCGAGCCAGAGGCGAAGAGATGGCGAAGGGAAGTTGAGAACAACGAAGGCATGTCGGCCGCCGGCAGCCGGACAGTGAGAGAGCCGAGAGTCGTTGTTCAAACCACCAGCGACATCGACATTCTCGACGACGGCTACCGGTGGAGGAAGTACGGACAGAAAGTGGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGTCCTGTAAGAAAGCATGTGGAGAGAGCTTCACACGATCAAAGGGCAGTGATCACAACCTATGAAGGCAAGCACAACCACGACGTCCCACCGGCACGAGGCAGTGGAAGCCATTCCCTCAGCCGTGCATTCCCCAACAACGACCCTCCAGCCACCGCAATCCGCCCATCCGCGGTGGCCCATCAGTCAAACAACGGCGGCCATCAGTCCCTGCAGACAGCATTCGCGGTGGAAATGGTCCAAAATCCCAATGGATTTTCATTCCCGGAATTCGGAAACTCAATGGGAATGGGATCGGGATCTTACATGAACCAAACCCAACCCAACCATAATTTCGCTCGAGCCAAAGAAGAGCCCAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTGA 1680 51.96 MASSSGSLDTSGNSHPSFTFSSHPFMTTSYSDLLASGIDDPPSSATPHGSLRSSTTGVPKFKSLPPPSLPLSPSSFFAIPPGLSPAELLDSPVLLSASHPLPSPTTGSFPSQSLNWKNNYGYNQQSIKEENKYLSNFSFQTQSSKPPPSSFQPSSTTAPMSWSFQEQGKKQDGFSSENNMVKQSFSPEYGIVQNQSQINGGGQLQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSLSMVVSNPAANEMADQSFTTQSSAQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDYDEVEPEAKRWRREVENNEGMSAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDQRAVITTYEGKHNHDVPPARGSGSHSLSRAFPNNDPPATAIRPSAVAHQSNNGGHQSLQTAFAVEMVQNPNGFSFPEFGNSMGMGSGSYMNQTQPNHNFARAKEEPRDHDMFIQSLLC 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 167081 169547 + CmoCh13G000170.1 Cmo13g00017 394072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00017 559 SUPERFAMILY WRKY DNA-binding domain 222 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 MobiDBLite consensus disorder prediction 46 61 - -
Cmo13g00017 559 MobiDBLite consensus disorder prediction 98 115 - -
Cmo13g00017 559 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 48 501 - -
Cmo13g00017 559 MobiDBLite consensus disorder prediction 95 115 - -
Cmo13g00017 559 ProSiteProfiles WRKY domain profile. 393 458 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 MobiDBLite consensus disorder prediction 273 299 - -
Cmo13g00017 559 MobiDBLite consensus disorder prediction 312 334 - -
Cmo13g00017 559 MobiDBLite consensus disorder prediction 32 66 - -
Cmo13g00017 559 SUPERFAMILY WRKY DNA-binding domain 390 458 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 ProSiteProfiles WRKY domain profile. 224 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 Pfam WRKY DNA -binding domain 399 455 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 MobiDBLite consensus disorder prediction 278 299 - -
Cmo13g00017 559 Gene3D WRKY domain 385 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 501 IPR044810 GO:0003700
Cmo13g00017 559 SMART WRKY_cls 398 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 MobiDBLite consensus disorder prediction 198 228 - -
Cmo13g00017 559 MobiDBLite consensus disorder prediction 198 223 - -
Cmo13g00017 559 Gene3D WRKY domain 210 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo13g00017 559 MobiDBLite consensus disorder prediction 312 382 - -
Cmo13g00017 559 MobiDBLite consensus disorder prediction 450 495 - -
Cmo13g00017 559 MobiDBLite consensus disorder prediction 335 370 - -
Cmo13g00017 559 MobiDBLite consensus disorder prediction 133 181 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00711 Cmo13g00017 CCT
Cmo02g00711 Cmo13g00017 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00017 Cmo-Chr13:167081 Cmo14g00029 Cmo-Chr14:153073 3.70E-118 dispersed
Cmo19g00938 Cmo-Chr19:8631530 Cmo13g00017 Cmo-Chr13:167081 5.66E-14 dispersed
Cmo01g00737 Cmo-Chr1:3806759 Cmo13g00017 Cmo-Chr13:167081 0 wgd
Cmo13g00017 Cmo-Chr13:167081 Cmo02g00711 Cmo-Chr2:4449430 1.68E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10794 PF03106 WRKY 2.20E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00017 K13424 - csv:101207158 889.797