Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00017 | ATGGCTTCTTCTTCCGGGAGCTTAGACACCTCCGGGAATTCCCATCCCTCTTTCACTTTCTCCAGTCATCCTTTTATGACTACTTCTTACTCTGACCTTCTCGCCTCCGGCATCGACGATCCTCCTTCCTCCGCCACACCCCACGGTTCTCTCCGGAGTTCCACTACCGGCGTTCCTAAATTCAAATCCCTCCCTCCTCCCTCTCTGCCTCTCTCTCCTTCTTCCTTTTTCGCCATTCCTCCTGGCTTGAGTCCGGCCGAGCTTCTCGATTCTCCTGTTCTTCTCAGTGCTTCTCATCCTCTGCCGTCGCCGACTACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAACAATTATGGTTATAATCAGCAGAGCATTAAAGAAGAAAACAAATATCTGTCCAACTTCTCATTTCAAACTCAATCGTCAAAGCCGCCGCCTTCGTCTTTTCAGCCTTCCTCCACCACAGCTCCGATGAGTTGGAGTTTTCAAGAACAGGGCAAGAAACAGGACGGTTTTTCGTCGGAGAATAATATGGTGAAGCAGAGCTTCTCACCGGAATACGGGATTGTTCAAAACCAGAGCCAAATCAACGGCGGTGGGCAGTTGCAGTCCGACTACGGCAACAATTACCCGCAACAATCTCAGACGGTGAATCGGAGGTCCGACGACGGATACAATTGGAGAAAATACGGCCAGAAACAGGTCAAGGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAGTTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCACCCGAAGCCCCAATCCACGAGAAGGTCGTCGCTGTCATCCGCCGGTTCTTCCCTATCCATGGTGGTTTCGAATCCGGCCGCCAACGAGATGGCGGACCAGTCATTTACAACTCAAAGCAGCGCCCAATTCGACGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATCGGCGACGACGACTTCGATCGTAGCTCTCAGAAGAGCAAATCCGGAGGGGACGACTATGATGAAGTCGAGCCAGAGGCGAAGAGATGGCGAAGGGAAGTTGAGAACAACGAAGGCATGTCGGCCGCCGGCAGCCGGACAGTGAGAGAGCCGAGAGTCGTTGTTCAAACCACCAGCGACATCGACATTCTCGACGACGGCTACCGGTGGAGGAAGTACGGACAGAAAGTGGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGTCCTGTAAGAAAGCATGTGGAGAGAGCTTCACACGATCAAAGGGCAGTGATCACAACCTATGAAGGCAAGCACAACCACGACGTCCCACCGGCACGAGGCAGTGGAAGCCATTCCCTCAGCCGTGCATTCCCCAACAACGACCCTCCAGCCACCGCAATCCGCCCATCCGCGGTGGCCCATCAGTCAAACAACGGCGGCCATCAGTCCCTGCAGACAGCATTCGCGGTGGAAATGGTCCAAAATCCCAATGGATTTTCATTCCCGGAATTCGGAAACTCAATGGGAATGGGATCGGGATCTTACATGAACCAAACCCAACCCAACCATAATTTCGCTCGAGCCAAAGAAGAGCCCAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTGA | 1680 | 51.96 | MASSSGSLDTSGNSHPSFTFSSHPFMTTSYSDLLASGIDDPPSSATPHGSLRSSTTGVPKFKSLPPPSLPLSPSSFFAIPPGLSPAELLDSPVLLSASHPLPSPTTGSFPSQSLNWKNNYGYNQQSIKEENKYLSNFSFQTQSSKPPPSSFQPSSTTAPMSWSFQEQGKKQDGFSSENNMVKQSFSPEYGIVQNQSQINGGGQLQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSLSMVVSNPAANEMADQSFTTQSSAQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDYDEVEPEAKRWRREVENNEGMSAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDQRAVITTYEGKHNHDVPPARGSGSHSLSRAFPNNDPPATAIRPSAVAHQSNNGGHQSLQTAFAVEMVQNPNGFSFPEFGNSMGMGSGSYMNQTQPNHNFARAKEEPRDHDMFIQSLLC | 559 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 167081 | 169547 | + | CmoCh13G000170.1 | Cmo13g00017 | 394072 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00017 | 559 | SUPERFAMILY | WRKY DNA-binding domain | 222 | 282 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 46 | 61 | - | - | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 98 | 115 | - | - | |
Cmo13g00017 | 559 | PANTHER | WRKY TRANSCRIPTION FACTOR WRKY24-LIKE | 48 | 501 | - | - | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 95 | 115 | - | - | |
Cmo13g00017 | 559 | ProSiteProfiles | WRKY domain profile. | 393 | 458 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 273 | 299 | - | - | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 312 | 334 | - | - | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 32 | 66 | - | - | |
Cmo13g00017 | 559 | SUPERFAMILY | WRKY DNA-binding domain | 390 | 458 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | ProSiteProfiles | WRKY domain profile. | 224 | 282 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | Pfam | WRKY DNA -binding domain | 224 | 280 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | Pfam | WRKY DNA -binding domain | 399 | 455 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 278 | 299 | - | - | |
Cmo13g00017 | 559 | Gene3D | WRKY domain | 385 | 451 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 48 | 501 | IPR044810 | GO:0003700 | |
Cmo13g00017 | 559 | SMART | WRKY_cls | 398 | 457 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | SMART | WRKY_cls | 223 | 281 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 198 | 228 | - | - | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 198 | 223 | - | - | |
Cmo13g00017 | 559 | Gene3D | WRKY domain | 210 | 283 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 312 | 382 | - | - | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 450 | 495 | - | - | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 335 | 370 | - | - | |
Cmo13g00017 | 559 | MobiDBLite | consensus disorder prediction | 133 | 181 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00711 | Cmo13g00017 | CCT | |
Cmo02g00711 | Cmo13g00017 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo13g00017 | Cmo-Chr13:167081 | Cmo14g00029 | Cmo-Chr14:153073 | 3.70E-118 | dispersed | |
Cmo19g00938 | Cmo-Chr19:8631530 | Cmo13g00017 | Cmo-Chr13:167081 | 5.66E-14 | dispersed | |
Cmo01g00737 | Cmo-Chr1:3806759 | Cmo13g00017 | Cmo-Chr13:167081 | 0 | wgd | |
Cmo13g00017 | Cmo-Chr13:167081 | Cmo02g00711 | Cmo-Chr2:4449430 | 1.68E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10794 | PF03106 | WRKY | 2.20E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00017 | K13424 | - | csv:101207158 | 889.797 |