Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00035 ATGTCGACCACCGAGGAACCCGAACTCGTCTGTGTCACCGGCGCCAGTGGCTGTATCGGATCCTGGCTCGCTCACCTCCTCCTCCTCCGCGGCTACTCCGTTCACGCCACCGTCCAAAATCTCAAGGATGAGAACGAAACGAAGCATCTGGAGGCTTTAGAAGGAGCGGATGCTCGTCTTCGTCTCTTCCAAATTGACCTCCTCGATTATGACTCCATTGCCGCCGCCATCTCTGGTTGCGCCGGCGTCTTCCACGTTGCGTCTCCCTGCATTGTTGACCCTGTAGAAGATCCTGAGGTGCGATATTATCTCACGAGCACTAGAAATGCAAGTTCTATTTTATGCTTTGAGGTCATAAGGGATTTACTGGATCCGGCTATCAAAGGAACTATCAATGTCCTGACGGCGGCTAAGGAGGCTGGGGTACAACGCGTAGTGGTAACTTCTTCTATCTCCGCCATGATTCCGAACCCTAACTGGCCGGCGAATGTTGCAATAAATGAAGAATGCTGGACAGATATTGATTACTGCAAGCAAAAGGGGCTGTGGTATTCAGTTTCGAAAACTCTAGCAGAAAAGGCTACTTGGGATTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCAGGCACAGTGATGGGCCCTGTGTTTCCTCCCAGGATTAATGCTAGCATGCAAATGCTTTTAAAACTGCTCAAGGGGTGCAATGAGACATTTGAGGACGTCTTTATCGGAGTTGTGCATTTTAAGGATGTTGCATTAGCACATATTTTGGTGTATGAAAACAAATCAGCAACAGGAAGACACTTTTGTGCTGAGGCCATAGCTGGTTACTCGGACTATGCTGCCAAGGTTGCTGAACTCTTCCCTCAGTATGAGGTGCCCAGGTCGATAGAAGATACACAACCTGGTTTGGTGAGAACAAAAGATGGAGGTAATAAGTTGATGAAGCTGGGGCTGGAATTCATCCCAATGGAACAAATCCTCAAGGACGCCGTTGAGGATCTAAAAAAGAAGGGATATATCTCCTGA 1038 48.27 MSTTEEPELVCVTGASGCIGSWLAHLLLLRGYSVHATVQNLKDENETKHLEALEGADARLRLFQIDLLDYDSIAAAISGCAGVFHVASPCIVDPVEDPEVRYYLTSTRNASSILCFEVIRDLLDPAIKGTINVLTAAKEAGVQRVVVTSSISAMIPNPNWPANVAINEECWTDIDYCKQKGLWYSVSKTLAEKATWDFAKEKGLDVVVINPGTVMGPVFPPRINASMQMLLKLLKGCNETFEDVFIGVVHFKDVALAHILVYENKSATGRHFCAEAIAGYSDYAAKVAELFPQYEVPRSIEDTQPGLVRTKDGGNKLMKLGLEFIPMEQILKDAVEDLKKKGYIS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 227262 231438 + CmoCh13G000350.1 Cmo13g00035 394090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00035 345 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 336 - -
Cmo13g00035 345 Pfam NAD dependent epimerase/dehydratase family 10 272 IPR001509 -
Cmo13g00035 345 Gene3D - 2 345 - -
Cmo13g00035 345 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 336 - -
Cmo13g00035 345 CDD FR_SDR_e 10 322 - -
Cmo13g00035 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 339 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00936 Cmo-Chr4:4726613 Cmo13g00035 Cmo-Chr13:227262 8.82E-107 dispersed
Cmo13g00035 Cmo-Chr13:227262 Cmo14g01075 Cmo-Chr14:5965793 1.15E-89 dispersed
Cmo13g00035 Cmo-Chr13:227262 Cmo14g01074 Cmo-Chr14:5943038 2.83E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00035 - - csv:101204420 578.556