Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00047 ATGTCGGTCTCCGTCGCGGTGTCCAACTCGCCGGGATTTTCCCCTTCCTCCTCGATGTTCTGCAACAAGACGTCGATTATTTCTCCGGCGCCGGAGGCGCTGACACTCACTTTGGCTCATTTGAATTCCTCGTCTTGCTCTTCTTCGCCTTCTTCGCCTTCTTCCCCTTTTCGGATTCGGTTTCCGAAGCCCCCTTCTGGGCTTTCCGCAGCGGCGGTGGCGGTGGCGGTGGCTTCCACCTCTTCTCCTTCATCGGCGTCGTCCGGCGCGATATTGAAAAGAAAAAGACCGGCGAGGTTGGATATTCCGTTGATGCCGTTGAGTTTTGCGGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTCGTGGAGGCAGAGAGAGATGGATACTCTGTGTATTGCAAGAGAGGGAGGCGGAGAGTTTCCATGGAAGATCGGTATTCCGCCGTCGTTGATCTACGAGGAAATTCCAAAGAGGCGTTTTTTGGTGTTTTTGATGGACATGGCGGCGCAAAAGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACATTTTGAATGAAATTGAAACAATGGCTGATAACGACACTGATTTTGAAGAAGCCATTAAACATGGCTACCTCACCACAGATTCTGAGTTCCTCAAGGAGGATCAACGCGGTGGCTCATGTTGTGTGACAGCCCTGATCAAGAAAGGCAACCTCGTCGTCTCCAACATCGGTGACTGTCGTGCTGTTCTCAGCAGCCATGGCGTTGCTGAGGCTATCACGTCGGACCACCGCCCGTCCCGGGAAGACGAGAGGCAGCGGATCGAGGCCACGGTAAGAATTGAAATGGTAGATGATGACGACGATGACGACGACTACGATTGA 876 53.08 MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLNSSSCSSSPSSPSSPFRIRFPKPPSGLSAAAVAVAVASTSSPSSASSGAILKRKRPARLDIPLMPLSFAAPVMPSPSSFREVVEAERDGYSVYCKRGRRRVSMEDRYSAVVDLRGNSKEAFFGVFDGHGGAKAAEFAANNLEKNILNEIETMADNDTDFEEAIKHGYLTTDSEFLKEDQRGGSCCVTALIKKGNLVVSNIGDCRAVLSSHGVAEAITSDHRPSREDERQRIEATVRIEMVDDDDDDDDYD 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 280901 281934 - CmoCh13G000470.1 Cmo13g00047 394102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00047 291 Gene3D - 114 283 IPR036457 -
Cmo13g00047 291 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 275 - -
Cmo13g00047 291 MobiDBLite consensus disorder prediction 258 278 - -
Cmo13g00047 291 Pfam Protein phosphatase 2C 136 274 IPR001932 -
Cmo13g00047 291 CDD PP2Cc 130 274 IPR001932 -
Cmo13g00047 291 ProSiteProfiles PPM-type phosphatase domain profile. 130 291 IPR001932 -
Cmo13g00047 291 SUPERFAMILY PP2C-like 130 274 IPR036457 -
Cmo13g00047 291 PANTHER PROTEIN PHOSPHATASE 2C 3 275 IPR015655 GO:0004722|GO:0006470
Cmo13g00047 291 SMART PP2C_4 123 290 IPR001932 -
Cmo13g00047 291 MobiDBLite consensus disorder prediction 258 291 - -
Cmo13g00047 291 ProSitePatterns PPM-type phosphatase domain signature. 162 170 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00047 Cmo-Chr13:280901 Cmo15g00018 Cmo-Chr15:135022 3.78E-39 dispersed
Cmo13g00047 Cmo-Chr13:280901 Cmo01g00706 Cmo-Chr1:3618988 5.80E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00047 K17506 - csv:101207841 422.165