Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00114 ATGGATAATATCCTCGACGATTTCCCCAATTCCTTCAACAATTTTCACTTCAATCCCCAACTCTCTAATGGGTTTCTCAAAATCAACCGCGAAACCGTCGATCCCCTCCAGATTCCGGCGAAGCCGCAGCAAAATCAGCAGCAAATCAGTAATAATTCATCATCGTCGTCGTCGATGTCGCCGTCGAGCTCCGAGGGAGACTCGCCGGACAGCCAAGACACCTCGAATACGATGCTGAAATACATCACCGAGATGCTGATGGATGAAGGAGAGGATCTTAAAACAAAGCCCTGTATGCTTCTTGATTGCTTGGCTCTTCAAGCTGCTGAGAAGTCTTTTTACGATGTTCTTGGCCAGAAATATCCTCCTTCTCCGACAGGAAATGGCGATTCAGCTCAGGATTTCAGCTCGGGTAACTCCTCTGTTCTTGGATTGTCTGAAAATTGTGTTGTGGGTCATGATTCGTTTGTTGGGATGCAATATATTGGGCATTTTAGGCAAGGAGTTGAGGAAGCTAGTAAGTTTCTTCCTGTTAATGGAACATTTGGGACAATTGATTTGGATAATGATTTGTGTGTGTCTGTTCCTTTTAAGGATGTTGATGTTTCTAGGATTAGTGGGTCGTTGAGAGACAAGAAAAACCGACAGAGGGAGGAGGAGAGTGATGGGGAGCTGAGAAGTAGTAAGCAGTCAGCTACTTTTGCTGATGATAATTCACTGTCTGATTTGTTTGATGAGGTTCTGTTGTGTCGGGGCGAGAGTCGGCAGTCGCCGTGCGGTTCGGATGAATCGTCGGAGACCGAAGTGAATAAGAAGAACTCGAGAGGGCGGAGAAGGAAAGGGAAGAAAACTCGATCTAAGAAGCAAGATAATAGTGTGGGAGTTGTGGATTTGTGGACATTGTTAACACAATGTGCTCAAGCTATTTCGAATTATGATCAAAGAACTGCTAATGAGCTGTTGAATCAGATCAGGCAGCATTCTAGTCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTCGCTAACGGTCTCGAGACTCGCCTTGCGGCTGGGACGCCTCTGTATATGCCATTTGCAAGTAATGAAACCTCGGCTGCTGAGATCCTGAAAGCGTTTCAGATGTTCATTAAGGCGTGCCCGTTTCGGCGTATGTCGTATTTCTATGCGAATCGAACGATTATGAAGCTAGCTGAGAAAGAAACAACGCTGCATATCATTGATTTTGGTATTCTGTATGGTCTCCAATGGCCTTGTTTGATTCAGCGGCTCTCTCGTCGACCTGGTGGACCTCCCAAGGTTCGAATCACCGGGATCGAGCTTCCCCAGCCGGGGTTTCGCCCTGCTGAACGGGTTGAGCAGACTGGTCGTCGCCTTGCACATTACTGTAAGAGATTCAATGTGCCATTTGAATACAAGGTCTTGGCTCAGAAATGGGAAACGGTTAAATACGAGGATCTTAATGTCAATCGAGACGAACTGACTATTGTAACTTGTTTGTTCCGACTTAAGAACGTACCCGACGAAACCGTGGTTGCGAACAGTCCACGAGACAGGGTTCTGAAGTTGATAAGGAAAATCAACCCAGATCTGTTCATTCATGAAGTGATGAATGGCTCATTCAACACTCCTTTCTTCAACACAAGGTTTAAGGAGGCATTGTTTCATTACTCGTCGTTGTTCGACATGTACGAAGCGACAATGCCTCGAGATATCCCAGAGAGGCATCTATGTGAGAAGGAAATCCTAGGAAGAGACATCGTGAACGTGATAGCGTGCGAGGGGCTCGAGAGAGTTGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAATACGAGGGCCGGGTTCAAGCAAGTACCATTAGACCAGGATCTGCTGAAGAATGTGGAGAAGATAGTGAACACAGAATACCACCAAGACTTCGTGATCGATCAGGACGGGTCGTGGATGTTGCAAGGGTGGAAGGGTCGGATCATCTATGCGTTATCGTGTTGGGTAGTCGCCTAA 2013 46.45 MDNILDDFPNSFNNFHFNPQLSNGFLKINRETVDPLQIPAKPQQNQQQISNNSSSSSSMSPSSSEGDSPDSQDTSNTMLKYITEMLMDEGEDLKTKPCMLLDCLALQAAEKSFYDVLGQKYPPSPTGNGDSAQDFSSGNSSVLGLSENCVVGHDSFVGMQYIGHFRQGVEEASKFLPVNGTFGTIDLDNDLCVSVPFKDVDVSRISGSLRDKKNRQREEESDGELRSSKQSATFADDNSLSDLFDEVLLCRGESRQSPCGSDESSETEVNKKNSRGRRRKGKKTRSKKQDNSVGVVDLWTLLTQCAQAISNYDQRTANELLNQIRQHSSPSGDGNQRLAHYFANGLETRLAAGTPLYMPFASNETSAAEILKAFQMFIKACPFRRMSYFYANRTIMKLAEKETTLHIIDFGILYGLQWPCLIQRLSRRPGGPPKVRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEYKVLAQKWETVKYEDLNVNRDELTIVTCLFRLKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVMNGSFNTPFFNTRFKEALFHYSSLFDMYEATMPRDIPERHLCEKEILGRDIVNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKNVEKIVNTEYHQDFVIDQDGSWMLQGWKGRIIYALSCWVVA 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 643198 645210 - CmoCh13G001140.1 Cmo13g00114 394169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00114 670 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 42 668 IPR005202 -
Cmo13g00114 670 PANTHER SCARECROW-LIKE PROTEIN 30 42 668 - -
Cmo13g00114 670 MobiDBLite consensus disorder prediction 39 75 - -
Cmo13g00114 670 Pfam GRAS domain family 300 667 IPR005202 -
Cmo13g00114 670 MobiDBLite consensus disorder prediction 254 289 - -
Cmo13g00114 670 MobiDBLite consensus disorder prediction 210 226 - -
Cmo13g00114 670 MobiDBLite consensus disorder prediction 210 232 - -
Cmo13g00114 670 ProSiteProfiles GRAS family profile. 289 668 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00114 Cmo-Chr13:643198 Cmo14g00135 Cmo-Chr14:586514 0 dispersed
Cmo01g00641 Cmo-Chr1:3281533 Cmo13g00114 Cmo-Chr13:643198 0 wgd
Cmo13g00114 Cmo-Chr13:643198 Cmo02g00793 Cmo-Chr2:4900767 0 wgd
Cmo13g00114 Cmo-Chr13:643198 Cmo20g00427 Cmo-Chr20:2014095 0 wgd
Cmo13g00114 Cmo-Chr13:643198 Cmo06g00292 Cmo-Chr6:1456180 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10800 PF03514 GRAS 1.30E-116 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00114 - - bhj:120083055 1093.95