Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00120 ATGGCTAATCCCGCCGTTCTCCTCTGCCTTGTGTCTCTCATCTCAGCAATGTGGACGGCAGATGCTAGAATTCCCGGCGCCTACTCCGGTGGCCCATGGCAGACCGCTCACGCCACCTTCTACGGCGGCTCCGACGCATCGGGCACAATGGGGTACGGGGTGAACACGGCGGCGCTGAGTACGGCGCTATTCAACAATGGGCTGAGCTGTGGCGCGTGTTTCGAGATCAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGTAGCCCGTCGATTGTCATAACGGCCACCAACTTCTGCCCGCCCAACTTCGCTCTGCCCAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCCCCCATTTCGATTTGGCCATGCCTATGTTTCTCAAGATCGCTGAATATCGCGCCGGCATCGTCCCCGTCGCCTTCCGCCGGGTGCCATGCCGGAAGCAAGGGGGGATCCGGTTCACGGTCCACGGGTTCAGGTACTTCAACTTGGTTTTAATCACGAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAGGGCACGCGAACCGGGTGGATGAGCATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGGCAGGCACTGTCTTTTAGAGTCACAGGCAGTGACAGACGGACATCCACCACGTACAACGTGGCGCCAGCTGATTGGCAGTTTGGTCAGACCTTCATCGGCAAGAATTTTAGGGTTTGA 744 58.6 MANPAVLLCLVSLISAMWTADARIPGAYSGGPWQTAHATFYGGSDASGTMGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKQGGIRFTVHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTTYNVAPADWQFGQTFIGKNFRV 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 694183 696043 + CmoCh13G001200.1 Cmo13g00120 394175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00120 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 36 153 IPR007112 -
Cmo13g00120 247 SUPERFAMILY PHL pollen allergen 150 241 IPR036749 -
Cmo13g00120 247 SUPERFAMILY Barwin-like endoglucanases 8 171 IPR036908 -
Cmo13g00120 247 Gene3D - 20 149 IPR036908 -
Cmo13g00120 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Cmo13g00120 247 PANTHER EXPANSIN 6 246 - -
Cmo13g00120 247 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Cmo13g00120 247 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Cmo13g00120 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Cmo13g00120 247 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cmo13g00120 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Cmo13g00120 247 SMART dpbb_1 56 143 IPR007112 -
Cmo13g00120 247 Gene3D - 153 245 IPR036749 -
Cmo13g00120 247 PANTHER EXPANSIN-A15 6 246 IPR002963 GO:0009664
Cmo13g00120 247 Pfam Lytic transglycolase 56 142 IPR009009 -
Cmo13g00120 247 PRINTS Expansin signature 78 89 IPR002963 GO:0009664
Cmo13g00120 247 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Cmo13g00120 247 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Cmo13g00120 247 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Cmo13g00120 247 PRINTS Expansin signature 51 65 IPR002963 GO:0009664
Cmo13g00120 247 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Cmo13g00120 247 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Cmo13g00120 247 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Cmo13g00120 247 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00120 Cmo20g00433 CCT
Cmo02g00797 Cmo13g00120 CCT
Cmo02g00797 Cmo13g00120 ECH
Cmo13g00120 Cmo20g00433 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00435 Cmo-Chr3:4977128 Cmo13g00120 Cmo-Chr13:694183 2.05E-151 dispersed
Cmo04g01251 Cmo-Chr4:6347642 Cmo13g00120 Cmo-Chr13:694183 3.51E-130 dispersed
Cmo04g02778 Cmo-Chr4:20041108 Cmo13g00120 Cmo-Chr13:694183 2.43E-122 dispersed
Cmo11g01802 Cmo-Chr11:12638289 Cmo13g00120 Cmo-Chr13:694183 3.76E-80 dispersed
Cmo13g00120 Cmo-Chr13:694183 Cmo04g01748 Cmo-Chr4:8826880 1.72E-114 dispersed
Cmo01g00634 Cmo-Chr1:3246744 Cmo13g00120 Cmo-Chr13:694183 9.07E-173 wgd
Cmo13g00120 Cmo-Chr13:694183 Cmo02g00797 Cmo-Chr2:4921039 3.30E-155 wgd
Cmo13g00120 Cmo-Chr13:694183 Cmo20g00433 Cmo-Chr20:2031500 7.51E-157 wgd
Cmo13g00120 Cmo-Chr13:694183 Cmo04g00211 Cmo-Chr4:1056541 7.34E-85 wgd
Cmo13g00120 Cmo-Chr13:694183 Cmo07g01042 Cmo-Chr7:5279087 3.98E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00120 - - csv:101206662 474.937