Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00131 ATGGAGGAAGAAAACGGCGCTCTGATTCAGAGCCTGATTGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGCATACTGTCAAGAAGCAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTCGAAGAGATTAGGGATAGCAAAGAGCCAGTCCCCGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTGGCCATAGAGAGGGAGCAAATTATGAACAAATTTCATGAGGTAACCGCTCGGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGTCTCTAGGCACGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATGTTCCGGACTCTGAGTTATTGGATGATATCTCTGCCCTTTATAACACGAGCAATGATTCTTCTATAGATCAAGATCGGCTGAGGAGACTGTCCGAAAAATTACAGTTATTAGGAATATCCGATCTTGCACAAGAGTCAATAGCTTTGGATGAGATGGTTACTGCTACTGATGGAGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTGAAGAAAATAAAAGATTTCGTGCAAACGGAGAACCTTGAAATGGACGATCCTGGTACAGAAAAGAATTCTCCAGCAAGTTGTAGTGGACAAATATCCAATGAGAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAATCCGGGCATGGGACGTGTCCGAAGACACAACAGAAACTTTCAAGCACTACTCTTACACCAAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCACTAGTGCTCGACCGTGTAGAAGCTCGTCCTCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGACAATCGCGTTGCTATAGCTGAGGCTGGTGCAATACCTCTCCTTGTCGGCCTTCTTTCAACTCCCGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTTCTCAAGAAGGGGAGCATGGAAGCTCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCAGTGGTGGATGAAAATAAAGTTCGAATCGGTGCCTCCGGAGCTATCCCGCCGCTCGTCACGCTGCTCAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTAAGAGCTGGCGTTGTTCCAACCTTGATGCAGCTTCTCACTGAACCTGGAACAGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTCGCCAGCCATTCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCGGTACCGGTTTTGGTCAATGTTATCGGTACAGGATCACCGAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCACCTTTGCTCAGGAGACGAGCAACACCTAGTAGAGGCCAGAGATCTTGGAGTGATAAGTTCATTGATAGATTTGGCACGCAGTGGCACTGACAGAGGAAAGCGAAAAGCTGCTCAGTTGCTTGAGCGAATGAACCGACTCTTCGAGCACGCAGCGCACCCGGAGGAGATTCGAGTGCTTCGGTTGCAAGCACCGGAGTCTCGACCTCAAAACCAGGCATCACAATCAACCTCGACCACGGAAGTCGTCGTTTTGGAGTTTCTAAAGGGAAAGGAAGTTTCAGCTTTGGACAAAAGGCGAAGAGTCTAA 2076 47.54 MEEENGALIQSLIDVVNEIAWISDFRHTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVPEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAIEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQSLGTVELVLAQFRRAKGRADVPDSELLDDISALYNTSNDSSIDQDRLRRLSEKLQLLGISDLAQESIALDEMVTATDGDPGQSIEKMAGLLKKIKDFVQTENLEMDDPGTEKNSPASCSGQISNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLESGHGTCPKTQQKLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPTSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHSEGKAAIGSAKAVPVLVNVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARDLGVISSLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHPEEIRVLRLQAPESRPQNQASQSTSTTEVVVLEFLKGKEVSALDKRRRV 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 747202 751838 + CmoCh13G001310.1 Cmo13g00131 394186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00131 691 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Cmo13g00131 691 MobiDBLite consensus disorder prediction 241 257 - -
Cmo13g00131 691 SUPERFAMILY ARM repeat 360 633 IPR016024 -
Cmo13g00131 691 CDD RING-Ubox_PUB 266 308 IPR045210 -
Cmo13g00131 691 Pfam U-box domain 262 332 IPR003613 GO:0004842|GO:0016567
Cmo13g00131 691 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 650 - -
Cmo13g00131 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Cmo13g00131 691 MobiDBLite consensus disorder prediction 233 258 - -
Cmo13g00131 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Cmo13g00131 691 PANTHER U BOX DOMAIN-CONTAINING 6 650 - -
Cmo13g00131 691 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Cmo13g00131 691 Gene3D - 347 675 IPR011989 -
Cmo13g00131 691 SMART arm_5 471 511 IPR000225 GO:0005515
Cmo13g00131 691 SMART arm_5 553 593 IPR000225 GO:0005515
Cmo13g00131 691 SMART arm_5 430 470 IPR000225 GO:0005515
Cmo13g00131 691 SMART arm_5 595 635 IPR000225 GO:0005515
Cmo13g00131 691 SMART arm_5 512 552 IPR000225 GO:0005515
Cmo13g00131 691 SMART arm_5 389 429 IPR000225 GO:0005515
Cmo13g00131 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 335 IPR013083 -
Cmo13g00131 691 Gene3D - 7 117 IPR036537 GO:0007166
Cmo13g00131 691 Pfam Armadillo/beta-catenin-like repeat 554 593 IPR000225 GO:0005515
Cmo13g00131 691 Pfam Armadillo/beta-catenin-like repeat 389 428 IPR000225 GO:0005515
Cmo13g00131 691 Pfam Armadillo/beta-catenin-like repeat 472 510 IPR000225 GO:0005515
Cmo13g00131 691 SUPERFAMILY RING/U-box 256 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00814 Cmo-Chr2:4982851 Cmo13g00131 Cmo-Chr13:747202 2.73E-29 dispersed
Cmo03g00526 Cmo-Chr3:5404181 Cmo13g00131 Cmo-Chr13:747202 2.62E-60 dispersed
Cmo04g00047 Cmo-Chr4:273414 Cmo13g00131 Cmo-Chr13:747202 3.41E-160 dispersed
Cmo04g01454 Cmo-Chr4:7459501 Cmo13g00131 Cmo-Chr13:747202 0 dispersed
Cmo07g00279 Cmo-Chr7:1369950 Cmo13g00131 Cmo-Chr13:747202 1.83E-59 dispersed
Cmo13g00131 Cmo-Chr13:747202 Cmo18g00911 Cmo-Chr18:10298233 0 dispersed
Cmo19g00194 Cmo-Chr19:1250112 Cmo13g00131 Cmo-Chr13:747202 1.58E-89 dispersed
Cmo01g01549 Cmo-Chr1:11926056 Cmo13g00131 Cmo-Chr13:747202 2.52E-17 transposed
Cmo20g00715 Cmo-Chr20:3514411 Cmo13g00131 Cmo-Chr13:747202 1.31E-164 transposed
Cmo01g00619 Cmo-Chr1:3195460 Cmo13g00131 Cmo-Chr13:747202 0 wgd
Cmo13g00131 Cmo-Chr13:747202 Cmo02g00812 Cmo-Chr2:4981426 2.03E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00131 - - csv:101218572 1112.83