Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00132 ATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGCCATCAAATCATGTCGGTGGCGGTGGAGTTAGCTCGATTCGACGCGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCGCTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTTAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCGCTTCGGAACGTTCCGGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGATAGCTCGTAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCATTCAACAATTTTCCTCAATATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTGTCATGAACTGTCCTATCTCAGGTGGCTTAGAAACCCCAACGGGATGGTACCCAACAAATTCAATCCCAACACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATAACCCAAGTGCTGAATTTGGTGAAATCCTCAAATTTGGGTATCAATAA 681 45.23 MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPIARNETQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNCPISGGLETPTGWYPTNSIPTPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 757753 759047 + CmoCh13G001320.1 Cmo13g00132 394187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00132 226 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 169 IPR045174 GO:0003700|GO:0006355
Cmo13g00132 226 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 21 169 - -
Cmo13g00132 226 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Cmo13g00132 226 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677|GO:0006355
Cmo13g00132 226 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00132 Cmo20g00451 CCT
Cmo13g00132 Cmo20g00451 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00443 Cmo-Chr3:5025083 Cmo13g00132 Cmo-Chr13:757753 2.76E-45 dispersed
Cmo07g00230 Cmo-Chr7:1152921 Cmo13g00132 Cmo-Chr13:757753 8.46E-37 dispersed
Cmo13g00132 Cmo-Chr13:757753 Cmo14g00147 Cmo-Chr14:642536 1.49E-52 dispersed
Cmo01g00618 Cmo-Chr1:3189631 Cmo13g00132 Cmo-Chr13:757753 1.69E-102 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo02g00815 Cmo-Chr2:4986104 1.15E-42 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo20g00451 Cmo-Chr20:2102972 6.93E-46 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo04g00221 Cmo-Chr4:1111117 2.82E-46 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo06g00304 Cmo-Chr6:1499655 1.85E-51 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo07g01030 Cmo-Chr7:5100192 4.33E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10801 PF02701 zf-Dof 2.80E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00132 - - cmax:111469505 460.299