Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00132 ATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGCCATCAAATCATGTCGGTGGCGGTGGAGTTAGCTCGATTCGACGCGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCGCTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTTAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCGCTTCGGAACGTTCCGGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGATAGCTCGTAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCATTCAACAATTTTCCTCAATATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTGTCATGAACTGTCCTATCTCAGGTGGCTTAGAAACCCCAACGGGATGGTACCCAACAAATTCAATCCCAACACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATAACCCAAGTGCTGAATTTGGTGAAATCCTCAAATTTGGGTATCAATAA 681 45.23 MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPIARNETQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNCPISGGLETPTGWYPTNSIPTPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 757753 759047 + CmoCh13G001320.1 Cmo13g00132 394187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00132 226 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 169 IPR045174 GO:0003700|GO:0006355
Cmo13g00132 226 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 21 169 - -
Cmo13g00132 226 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Cmo13g00132 226 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677|GO:0006355
Cmo13g00132 226 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00132 - - - cmax:111469505 460.299
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00132 Cmo20g00451 CCT
Cmo13g00132 Cmo20g00451 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00443 Cmo-Chr3:5025083 Cmo13g00132 Cmo-Chr13:757753 2.76E-45 dispersed
Cmo07g00230 Cmo-Chr7:1152921 Cmo13g00132 Cmo-Chr13:757753 8.46E-37 dispersed
Cmo13g00132 Cmo-Chr13:757753 Cmo14g00147 Cmo-Chr14:642536 1.49E-52 dispersed
Cmo01g00618 Cmo-Chr1:3189631 Cmo13g00132 Cmo-Chr13:757753 1.69E-102 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo02g00815 Cmo-Chr2:4986104 1.15E-42 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo20g00451 Cmo-Chr20:2102972 6.93E-46 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo04g00221 Cmo-Chr4:1111117 2.82E-46 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo06g00304 Cmo-Chr6:1499655 1.85E-51 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo07g01030 Cmo-Chr7:5100192 4.33E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 6.3e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 3.2e-41 165.6
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.6e-40 161.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.6e-40 161.8
Cmo15g01373 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.7e-39 160.2
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 6.1e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.4e-41 166.8
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 5.5e-38 154.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.7e-37 152.5
Cmo04g02761 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 5.1e-40 162.5
Cmo14g00147 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.2e-38 157.1
Cmo06g00304 CCT,CST,ECH 1 127 C2C2-Dof Transcription Factor Family AT2G37590 64.8 4.8e-38 156.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 58.0 4.1e-37 152.9
Cmo13g00132 CCT,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cmo15g01373 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 73.1 1.5e-39 161.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 6.2e-40 162.5
Cmo13g00132 CCT,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cmo15g00409 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.3e-37 154.8
Cmo03g00443 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.4e-36 150.6
Cmo03g00443 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.9e-37 152.5
Cmo13g00132 CCT,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 51.6 2.2e-36 150.6
Cmo11g00231 CCT,CST 26 311 C2C2-Dof Transcription Factor Family AT5G60850 53.2 3.9e-50 196.1
Cmo10g00299 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 1.1e-47 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10801 PF02701 zf-Dof 2.80E-33 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00132 Cmo_Chr13 FPKM 32.262306 34.265312 13.691263 13.088792 13.842311 14.161968 13.514222 19.48802 17.268566 16.570311