Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00170 ATGGAGAACGATTCTTCCGCTATGGAGATTAAAGGGTTTCCCACCTACGACGGCAAGTACTTGCTCTACAACGTTCTCGGCAACTTCTTCGAGGTCTCCGCCAAGTACGCCCCTTCGATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACCAATTCTGAGACGAAGGAAGAGGTAGCGATAAAGAAGATAGGGAACGCTTTCGATAACCGGATTGATGCCAAGAGGACCCTTCGTGAGATAGAACTCCTATGCCATATGGACCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCACCAGATCATTCGCTCTAGCCAGGCTCTGACAGACGATCACTGTCAGTACTTCTTGTACCAATTACTGCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAATCTGCTTCTCAATGCAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTGACACGATGGTATCGAGCGCCTGAGCTTCTACTCAACACTTCCGAATACACTGCAGCGATTGATATTTGGGCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGGAAAAGACTATGTGCAGCAATTGGGGCTTATAACCGAGTTGCTTGGTTCACCAGATGATTCAGATCTCGGGTTTCTTAGAAGTGATAATGCAAGGAAGTACGTTAAGCAACTTCCTCATTTCCCGAAACAACCACTGATTGAAAAATTCCCAGATCTTCCTCCACTGGCAGTTGATCTTGCAGAGAGGATGCTGCTCTTTGATCCAAGCAAGAGAATAACTGGTAATGCACCTACCTTTGCATCTGACATTACTTTAAGAACCTACATTTTCTTGACATGA 999 43.34 MENDSSAMEIKGFPTYDGKYLLYNVLGNFFEVSAKYAPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIELLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWAVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITGNAPTFASDITLRTYIFLT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1135229 1137931 + CmoCh13G001700.1 Cmo13g00170 394225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00170 332 SMART serkin_6 40 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00170 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cmo13g00170 332 Pfam Protein kinase domain 40 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00170 332 ProSiteProfiles Protein kinase domain profile. 37 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00170 332 Gene3D Phosphorylase Kinase; domain 1 20 120 - -
Cmo13g00170 332 SUPERFAMILY Protein kinase-like (PK-like) 40 313 IPR011009 -
Cmo13g00170 332 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Cmo13g00170 332 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 15 314 - -
Cmo13g00170 332 Gene3D Transferase(Phosphotransferase) domain 1 121 314 - -
Cmo13g00170 332 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo13g00170 332 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00170 Cmo-Chr13:1135229 Cmo15g01314 Cmo-Chr15:9024086 0 dispersed
Cmo01g00581 Cmo-Chr1:2943268 Cmo13g00170 Cmo-Chr13:1135229 1.25E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74760 PF00069 Pkinase 3.80E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00170 K04371 - csv:101218403 610.912