Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00174 ATGGGTTGCTTTTGTTGCTTCGGTTCATCGAGCAAGAAACCGGAGAAAATCGAACAAAACAACCCTAACGCCTTCAATTCCAAAACTCACAAGCCCGATGATCGAACGCCTTCAGATAAACCCAAAGTAAATTCAAGTTTAGCAGTGAAAAGGGATTCTGATGTGAAGGTTGTTGTGTCTAAAGATGATCAATTAGCTTTAGATGTTAAGAAATTGAATTTGAAAGATGAAGTTTCTGAGGATGGAGAAACCAATGGCCGTGCTAAGACTTTTACATTTGAAGAACTTAAGGCTGCAACAGGTAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTATAAAGGGTACTTGCAGCAAGTTAGTGAGATTGTTGCAATCAAACAACTCGACCGCAATGGAGTTCAAGGAATTCGGGAGTTTGTTGTGGAAGTCTTGACTTTAAGTTTAGCTGATCACCCTAACCTTGTTAAACTCATTGGCTTTTGTGCTGAAGGGGATCAGAGGCTGTTGGTTTATGAATATATGCCATTGGGATCTTTGGAAAACCATTTACACGATCTTCGACCCGGTGTGAAGGTAATTGACTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAAGGGTTTGGAGTATTTGCATGAGAAGATGAAGCCCCCGGTCATCTATCGTGATCTGAAATGCTCGAACATTTTGCTCGGTGAAGGATATCATCCAAAGCTATCTGATTTCGGATTAGCTAAAGTAGGTCCCAGTGGGGATAAAACCCATGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCACCAGATTACGCAATGACCGGTCAGCTGACGTTCAAATCAGATATTTACAGCTTTGGTGTTGTTTTATTAGAACTCATCACTGGCAGGAAAGCGATCGATCATTCCAAACCTCATTCGGAACAAAATCTTGTCGCTTGGGCGCGACCGTTGTTCAGAGACCGGAAGAAGTTCTCACAAATGGTTGATCCAATGCTCCAAGGACATTATCCTGTGAGAGGATTATACCAATCTCTTGCCATAGCAGCAATGTGTGTTCAGGAGCAACCGAACATGCGGCCAGTTATATCCGACGTGGTTACCGCTTTAAACTACCTAGCCTCCCAGAAATACGATCCTCAAACACAACCAAACCATATCTCCCAAAAGAGACCACCTTCTCCTAAAATGGAACGGGACGATGATAAGAGGCATACTTCGGACGACGACGAGTCAGAGAGAGAGTGA 1269 43.26 MGCFCCFGSSSKKPEKIEQNNPNAFNSKTHKPDDRTPSDKPKVNSSLAVKRDSDVKVVVSKDDQLALDVKKLNLKDEVSEDGETNGRAKTFTFEELKAATGNFRSDCFLGEGGFGKVYKGYLQQVSEIVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGVKVIDWNTRMKIAAGAAKGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPMLQGHYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQTQPNHISQKRPPSPKMERDDDKRHTSDDDESERE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1158527 1161404 + CmoCh13G001740.1 Cmo13g00174 394229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00174 422 MobiDBLite consensus disorder prediction 13 27 - -
Cmo13g00174 422 MobiDBLite consensus disorder prediction 8 46 - -
Cmo13g00174 422 Gene3D Phosphorylase Kinase; domain 1 72 179 - -
Cmo13g00174 422 SUPERFAMILY Protein kinase-like (PK-like) 89 397 IPR011009 -
Cmo13g00174 422 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00174 422 CDD STKc_IRAK 109 378 - -
Cmo13g00174 422 MobiDBLite consensus disorder prediction 399 422 - -
Cmo13g00174 422 MobiDBLite consensus disorder prediction 28 46 - -
Cmo13g00174 422 Gene3D Transferase(Phosphotransferase) domain 1 180 398 - -
Cmo13g00174 422 PANTHER OS07G0668900 PROTEIN 1 411 - -
Cmo13g00174 422 MobiDBLite consensus disorder prediction 384 422 - -
Cmo13g00174 422 Pfam Protein kinase domain 108 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00174 422 SMART serkin_6 103 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00174 422 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 411 - -
Cmo13g00174 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Cmo13g00174 422 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00174 Cmo-Chr13:1158527 Cmo14g00169 Cmo-Chr14:757185 2.23E-177 dispersed
Cmo13g00174 Cmo-Chr13:1158527 Cmo20g00489 Cmo-Chr20:2288463 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74761 PF00069 Pkinase 3.40E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00174 - - bhj:120083806 788.875