Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00174 | ATGGGTTGCTTTTGTTGCTTCGGTTCATCGAGCAAGAAACCGGAGAAAATCGAACAAAACAACCCTAACGCCTTCAATTCCAAAACTCACAAGCCCGATGATCGAACGCCTTCAGATAAACCCAAAGTAAATTCAAGTTTAGCAGTGAAAAGGGATTCTGATGTGAAGGTTGTTGTGTCTAAAGATGATCAATTAGCTTTAGATGTTAAGAAATTGAATTTGAAAGATGAAGTTTCTGAGGATGGAGAAACCAATGGCCGTGCTAAGACTTTTACATTTGAAGAACTTAAGGCTGCAACAGGTAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTATAAAGGGTACTTGCAGCAAGTTAGTGAGATTGTTGCAATCAAACAACTCGACCGCAATGGAGTTCAAGGAATTCGGGAGTTTGTTGTGGAAGTCTTGACTTTAAGTTTAGCTGATCACCCTAACCTTGTTAAACTCATTGGCTTTTGTGCTGAAGGGGATCAGAGGCTGTTGGTTTATGAATATATGCCATTGGGATCTTTGGAAAACCATTTACACGATCTTCGACCCGGTGTGAAGGTAATTGACTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAAGGGTTTGGAGTATTTGCATGAGAAGATGAAGCCCCCGGTCATCTATCGTGATCTGAAATGCTCGAACATTTTGCTCGGTGAAGGATATCATCCAAAGCTATCTGATTTCGGATTAGCTAAAGTAGGTCCCAGTGGGGATAAAACCCATGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCACCAGATTACGCAATGACCGGTCAGCTGACGTTCAAATCAGATATTTACAGCTTTGGTGTTGTTTTATTAGAACTCATCACTGGCAGGAAAGCGATCGATCATTCCAAACCTCATTCGGAACAAAATCTTGTCGCTTGGGCGCGACCGTTGTTCAGAGACCGGAAGAAGTTCTCACAAATGGTTGATCCAATGCTCCAAGGACATTATCCTGTGAGAGGATTATACCAATCTCTTGCCATAGCAGCAATGTGTGTTCAGGAGCAACCGAACATGCGGCCAGTTATATCCGACGTGGTTACCGCTTTAAACTACCTAGCCTCCCAGAAATACGATCCTCAAACACAACCAAACCATATCTCCCAAAAGAGACCACCTTCTCCTAAAATGGAACGGGACGATGATAAGAGGCATACTTCGGACGACGACGAGTCAGAGAGAGAGTGA | 1269 | 43.26 | MGCFCCFGSSSKKPEKIEQNNPNAFNSKTHKPDDRTPSDKPKVNSSLAVKRDSDVKVVVSKDDQLALDVKKLNLKDEVSEDGETNGRAKTFTFEELKAATGNFRSDCFLGEGGFGKVYKGYLQQVSEIVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGVKVIDWNTRMKIAAGAAKGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPMLQGHYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQTQPNHISQKRPPSPKMERDDDKRHTSDDDESERE | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1158527 | 1161404 | + | CmoCh13G001740.1 | Cmo13g00174 | 394229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00174 | 422 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
Cmo13g00174 | 422 | MobiDBLite | consensus disorder prediction | 8 | 46 | - | - | |
Cmo13g00174 | 422 | Gene3D | Phosphorylase Kinase; domain 1 | 72 | 179 | - | - | |
Cmo13g00174 | 422 | SUPERFAMILY | Protein kinase-like (PK-like) | 89 | 397 | IPR011009 | - | |
Cmo13g00174 | 422 | ProSiteProfiles | Protein kinase domain profile. | 103 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00174 | 422 | CDD | STKc_IRAK | 109 | 378 | - | - | |
Cmo13g00174 | 422 | MobiDBLite | consensus disorder prediction | 399 | 422 | - | - | |
Cmo13g00174 | 422 | MobiDBLite | consensus disorder prediction | 28 | 46 | - | - | |
Cmo13g00174 | 422 | Gene3D | Transferase(Phosphotransferase) domain 1 | 180 | 398 | - | - | |
Cmo13g00174 | 422 | PANTHER | OS07G0668900 PROTEIN | 1 | 411 | - | - | |
Cmo13g00174 | 422 | MobiDBLite | consensus disorder prediction | 384 | 422 | - | - | |
Cmo13g00174 | 422 | Pfam | Protein kinase domain | 108 | 322 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00174 | 422 | SMART | serkin_6 | 103 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00174 | 422 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED | 1 | 411 | - | - | |
Cmo13g00174 | 422 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 226 | 238 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo13g00174 | 422 | ProSitePatterns | Protein kinases ATP-binding region signature. | 109 | 132 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo13g00174 | Cmo-Chr13:1158527 | Cmo14g00169 | Cmo-Chr14:757185 | 2.23E-177 | dispersed | |
Cmo13g00174 | Cmo-Chr13:1158527 | Cmo20g00489 | Cmo-Chr20:2288463 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74761 | PF00069 | Pkinase | 3.40E-44 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00174 | - | - | bhj:120083806 | 788.875 |