Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00196 ATGGACGCAAAATCCAGCCCAACTTCAACCATCTTCCGTTCTCAGTCGCCGTCGTCGTCCCCATTACCGCCGCCGCAGAGTGTTCAGGCCGGCTTGGTGGCCAGTCCGTGTGCTGCGTGCAAGACTCTGAGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCTGATCCTCTCAAGTTTACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGAATTGATGCAGTGAGTAGCTTGGTATACGAAGCAAGCGCAAGAATCAGAGATCCAGTATATGGATGTGCAGGGGCCATTTCCCAGCTCCAAAAACAAATAAACGAACTGCAAGCAGAGCTAGCCAAAACACAGGCTGAGCTTCTCAACATCCACAGCCACCAAACAAATTTGGTGGCTCTAATTTGCAAGGAACTAGCTCAAACACCGCCACCGGTGTCGCCCCTGGACCACCACACACTCGACAACAATCTCAACACTGCCACTCCTCAGAGCTACACAAATTTGTTTGAAGATAGCAGCATTTGGGAGCCTCTTTGGACATGA 591 50.76 MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQINELQAELAKTQAELLNIHSHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQSYTNLFEDSSIWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1406230 1407880 - CmoCh13G001960.1 Cmo13g00196 394251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00196 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 195 - -
Cmo13g00196 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 17 195 - -
Cmo13g00196 196 Coils Coil 115 142 - -
Cmo13g00196 196 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Cmo13g00196 196 MobiDBLite consensus disorder prediction 1 27 - -
Cmo13g00196 196 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Cmo13g00196 196 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00277 Cmo-Chr4:1399587 Cmo13g00196 Cmo-Chr13:1406230 6.81E-70 dispersed
Cmo04g01315 Cmo-Chr4:6708105 Cmo13g00196 Cmo-Chr13:1406230 2.46E-71 dispersed
Cmo13g00196 Cmo-Chr13:1406230 Cmo15g00444 Cmo-Chr15:2017329 5.10E-54 dispersed
Cmo13g00481 Cmo-Chr13:5814170 Cmo13g00196 Cmo-Chr13:1406230 7.42E-51 dispersed
Cmo01g00564 Cmo-Chr1:2827611 Cmo13g00196 Cmo-Chr13:1406230 6.44E-101 wgd
Cmo13g00196 Cmo-Chr13:1406230 Cmo02g00870 Cmo-Chr2:5297039 3.62E-73 wgd
Cmo13g00196 Cmo-Chr13:1406230 Cmo20g00502 Cmo-Chr20:2396456 2.65E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10804 PF03195 LOB 1.30E-40 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00196 - - csv:101222262 298.13