Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00217 ATGACCAAATACAAATTACCTCGCCCTTTTATGTTCGGTCTTACCCAAGTTTTCACCTGCACCGGCTTGCTCTCCATCGCATTCCCTTATATAAATTCAGTCTATGTAGCTTCGTTGATCATTGGGTTTGGCCTTGGAGCCCAAACTCCATTGATATTGGCCATAATCTCTGATCTCTTTGGCCTCAAACATTACTCGTCACTGCTCAATTGTGGGCAACTAGCAGTCCCACTTGGATCATATATAATGAACATGGAAGTAGTAGGGAAGTTTTACGATGCTGAAGCCACTAAAATTCAGAATGTGAAGAACGGGAAGGGTCTAACTAGCATTGGAACTCCTTGCTTTAGTGAATCGTTCATGATTTTGACTGCAGTGACTTTGTTTGGAGCGATGGCTTCGTTTGTGCTAGCTCTCCTCTTCCATTACCAACCATTCTTTGTAGCAATGGCTGACAACTCTTTACCAGAAAGCTGGCGTTTTATCAAACAAGTCGTCGAAGGACGATGGTTTGCGGTATTCGCCTCCTTTCTAATCATGATCGGCGCTGGTTCAACCTACATTTTTGGAACATACTCGAAAGCAATAAAGTCGCAATTCGATTACAATCAAACACAAATCAACACATTAGGATTTGCCAAAGATCTCGGCTCAAACTTCGGAGTTTTCGCTGGCCTTCTCGGCGAAGTTGCTCCACCGTGGGTTCTATTCCTCGTCGGCTCAGCTCTCAACTTCTGGAGTTACTTCATGATTTGGCTCTCCATCACCGGCCGTATCGCCAAGCCCCCGTTTTGGGAAATGTTCCTTTTCATCTGCGTAGCTGCGAATTCACAAAATTTCGCCAACACCGCCATTTTGGTCACGAGCGTTCGAAACTTCCCGGACCGACGAGGCATCATTCTTGGGCTTCTCAAGGGTTTCGTTGGGTTCGGAGGTGCTATTTTGACTCAATTCTATTTAGCTCTTTACGGCCATGATAACCCAACCAATTTGGTGCTTCTTCTCTCTTGGCTACCAACCGTTGCGTCTATGTTGTTTTTTCTCTCAATTCGACCAATCAAAGTCCGTAAAGATCCAGATGAGCTTAGAGTTCTTTACCATTTGCTTTATGTGTCCATAATTTTGGCGCTGTTTCTCTTATTCTTAACCATAACCCAAAAACAAACAGTGTTTACTCAAGAAGCTTACATGAGCGGCGCCACCGTGATCATCGGCTTATTGCTTATCCCTCTTTTGATAGCCATTAGAGAAGAGTTCATGCTCTTCAAACTCAACAAACAAACCCTAAATAACAATCCTACCGTCCCCATTTTAATGCCGGAGCACGAGCCTTCCCCCAAAGCCCCACCCACAATACAGCAAATTCCCGAAGCTTCAACCTCGTGTTTCTCAATGACATTCAAAAAGCCACAAAGAGGTGAAGATTTCACCATTTTACAAGCTTTATTCAGCAAAGACATGGCGCTTGTTTTCATAGCCACACTTACTGCCTGTGGCGCATCAATTGCAGCCATTGATAACTTAGGTCAGGTTGGTGAATCACTTGGCTATCCATCTCAAACAATAAGCATATTCGTTTCGTGGGTTTCGATATTCAATTTCTTCGGTCGGGTCTTCTCCGGTTTCATCTCGGAAGCGCTTATGACCAAATACAAATTACCCCGACCTCTCATGTTCGCTTTTTCCCATCTTTTAACTTGCATTGGCATTCTCTTTATTGCCTTCCCATATAAGGGTTCCGTTTACGCAGCGTCCTTGATCATTGGGTTCGGGTTTGGAGCGCAAGTTCCAATGGTGTTCGCCATAATCTCGGAACTCTTCGGCCTCAAATATTACTCGACAATATTCAATTGTGGGCAATTGGCTGTCCCAATTGGATCTTACATACTGAACGTTGATGTAATTGGGAAGTTGTATGACATTGAAGCAGCAAAGCTTGGTGGGGTTAAGAATGGGAAGGGGCTAACTTGCACGGGCACTCATTGCTTTAGTGGGTCTTTCTTGATTTTGGCTGTGGTGGTATTGCTCGGAGCTGTGGTTTCGCTTGTGTTGGCTTATAGGACTCAAGACTTTTACAAAGGCGACGTTTATAACAAGTATAGAGAGGACATGTGGATTCCTCAATCGGATATGGAATTCTATTGTATAGATGACAGGAAGAAAGGTGGTAACAATTTACCACGGATGGATATGCCGCCCAAATATAATTTTCTCAAGCTTTAA 2223 43.9 MTKYKLPRPFMFGLTQVFTCTGLLSIAFPYINSVYVASLIIGFGLGAQTPLILAIISDLFGLKHYSSLLNCGQLAVPLGSYIMNMEVVGKFYDAEATKIQNVKNGKGLTSIGTPCFSESFMILTAVTLFGAMASFVLALLFHYQPFFVAMADNSLPESWRFIKQVVEGRWFAVFASFLIMIGAGSTYIFGTYSKAIKSQFDYNQTQINTLGFAKDLGSNFGVFAGLLGEVAPPWVLFLVGSALNFWSYFMIWLSITGRIAKPPFWEMFLFICVAANSQNFANTAILVTSVRNFPDRRGIILGLLKGFVGFGGAILTQFYLALYGHDNPTNLVLLLSWLPTVASMLFFLSIRPIKVRKDPDELRVLYHLLYVSIILALFLLFLTITQKQTVFTQEAYMSGATVIIGLLLIPLLIAIREEFMLFKLNKQTLNNNPTVPILMPEHEPSPKAPPTIQQIPEASTSCFSMTFKKPQRGEDFTILQALFSKDMALVFIATLTACGASIAAIDNLGQVGESLGYPSQTISIFVSWVSIFNFFGRVFSGFISEALMTKYKLPRPLMFAFSHLLTCIGILFIAFPYKGSVYAASLIIGFGFGAQVPMVFAIISELFGLKYYSTIFNCGQLAVPIGSYILNVDVIGKLYDIEAAKLGGVKNGKGLTCTGTHCFSGSFLILAVVVLLGAVVSLVLAYRTQDFYKGDVYNKYREDMWIPQSDMEFYCIDDRKKGGNNLPRMDMPPKYNFLKL 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1701738 1705758 - CmoCh13G002170.1 Cmo13g00217 394272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00217 740 CDD MFS_Mch1p_like 168 669 - -
Cmo13g00217 740 Gene3D MFS general substrate transporter like domains 486 692 IPR036259 -
Cmo13g00217 740 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 1 138 - -
Cmo13g00217 740 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 156 703 - -
Cmo13g00217 740 Pfam Nodulin-like 169 415 IPR010658 -
Cmo13g00217 740 Gene3D MFS general substrate transporter like domains 3 350 IPR036259 -
Cmo13g00217 740 SUPERFAMILY MFS general substrate transporter 8 357 IPR036259 -
Cmo13g00217 740 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 156 703 - -
Cmo13g00217 740 SUPERFAMILY MFS general substrate transporter 399 690 IPR036259 -
Cmo13g00217 740 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00217 Cmo-Chr13:1701738 Cmo13g00222 Cmo-Chr13:1748704 3.07E-54 dispersed
Cmo13g00216 Cmo-Chr13:1698204 Cmo13g00217 Cmo-Chr13:1701738 2.51E-76 tandem
Cmo13g00217 Cmo-Chr13:1701738 Cmo13g00218 Cmo-Chr13:1713289 1.23E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00217 - - csv:101204389 867.84