Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00221 ATGGGCAACAAGGGAGGATCAGAAGCTTGGGCTTTCATCAAACAAGTGGTAGCAGGACGATGGTTTAGTGTATTCGCGGGACTGATAATGATGATCGGCAACGGCACCACTTACGTGTTTCCAACATATTCCAAAGTCATAAAAACCCAATTTGATTACAGCCAAACCCAAATTAACACATTGGGATTCGCCAAAGATCTCGGGTCGAACATCGGAATTATCGCGGGGCTTCTGGCGGAGGTGACTCCGACGTGGGTTCTCTTCATAATTGGGGCATTTCAAAACTTCACCGGCTTCTTCTTGATTTGGCTCTCCATAACTGCCCGGATCGCCAAGCCAAAATTCTGGCAAATGTTCATTCTGGTTTGCTTCGGTACTAATTCTTCAAATTGGGCCAACACTGCGATTATGGTGACGAGCGTGAGAAACTTCCCCGACCGACGAGGGATCATTTTGGGTCTTCTTAAAGGGTATGTGGGTATTGGAGGTGCCATCATAAGCCAACTTTATTTAGCCATTTACGGCCACAATGATCCATCCAATCTGGTTCTTCTTTTCGCATGGCTCCCCTCTCTCCTAATCCTCATCCTTTTCCCCTCAATTCGACCAATCCGTATCCGTAAGCATCCCGATGAACTCAAAGTGTTTTACCAGTTACTTTACGTCTCAATTCTTTTGGCCATTTTCATCTTGTTTTTAACCATTGCACAAAAACAAGTGGTTTTCTCTCAAGCTGGGTACGTAGGTGGCGCATCCTTTGTGGTTTGCTTACTATGCGTACCCATTTTAATCGCATGTAGAGAAGAGTTGTTGCTCTACAAACTCAACAAAGAAACCGCTGCTCCTTCTGTCGCACTCTCCATGCTTCACCAAAACCCTCCCACCCTCCCTACCTCTGCCGACTCGGAAATCCCCGAGATTTCGCCCTCGTGTTGCCCAAACATATGGAACAAGCCTGAAAGAGGGGAGGATTTCACCATCTTGCAAGCCGTGTTCAGCAAAGATATGGCTCTTATTTGCTTAGCTACATTTTCTGGATGTGGCTCCTCTCTAGCCGCTATAGATAATCTAGGTCAAGTTGGGGAATCACTTGGCTACTCACAACGAGCCATAGGCATCCTTGTTTCATGGGTTTCCATATTCAATTTCTTCGGCCGAGTTTTCTCTGGCTTCATCTCAGAAACCCTCATGACCAAATACAAGTTACCTCGTCCTCTAACCTTTGCTTTTGCCTTTCTCATCACTTGCGTTGGCCAGCTTTTCATCGCCTACCCTTTCCCAGGCTCCCTCTACTTAGCTGCCATAATTATTGGGTTTGGATTTGGAGCTCAAAATCCAATGCTATTTGCCGTAATATCTGAGATGTTTGGTCTTAAACGTTACTCCACGCTCTTCAATTGTGGGCAATTGGCAGCCCCATTTGGGTCTTACATACTCAACGTGGATGTTGTCGGGAAGCTGTACGATATGGAAGCTTTACGTGAACGTAAGCAGATTGCGGGGAAGGGGTTAAATTGCACTGGAGCTCATTGCTTTGGTGGGTCTTTCACAGTATTGGCTGCAGCCACATTGTTTGGAGCCGTGGTTATGTTTGTGTTGGCTTACCGGACTCGAGAATTCTACAAAAGGGATGTGTATAAGAACTTTAACGAGGAGATATGGATTCCACAAACCGAAATGGAGTTCTATCGCTTGGATAACAAGAAGAACATTGAGGATTAA 1722 45.7 MGNKGGSEAWAFIKQVVAGRWFSVFAGLIMMIGNGTTYVFPTYSKVIKTQFDYSQTQINTLGFAKDLGSNIGIIAGLLAEVTPTWVLFIIGAFQNFTGFFLIWLSITARIAKPKFWQMFILVCFGTNSSNWANTAIMVTSVRNFPDRRGIILGLLKGYVGIGGAIISQLYLAIYGHNDPSNLVLLFAWLPSLLILILFPSIRPIRIRKHPDELKVFYQLLYVSILLAIFILFLTIAQKQVVFSQAGYVGGASFVVCLLCVPILIACREELLLYKLNKETAAPSVALSMLHQNPPTLPTSADSEIPEISPSCCPNIWNKPERGEDFTILQAVFSKDMALICLATFSGCGSSLAAIDNLGQVGESLGYSQRAIGILVSWVSIFNFFGRVFSGFISETLMTKYKLPRPLTFAFAFLITCVGQLFIAYPFPGSLYLAAIIIGFGFGAQNPMLFAVISEMFGLKRYSTLFNCGQLAAPFGSYILNVDVVGKLYDMEALRERKQIAGKGLNCTGAHCFGGSFTVLAAATLFGAVVMFVLAYRTREFYKRDVYKNFNEEIWIPQTEMEFYRLDNKKNIED 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1740677 1742398 + CmoCh13G002210.1 Cmo13g00221 394276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00221 573 Gene3D MFS general substrate transporter like domains 18 210 IPR036259 -
Cmo13g00221 573 Gene3D MFS general substrate transporter like domains 335 543 IPR036259 -
Cmo13g00221 573 SUPERFAMILY MFS general substrate transporter 24 543 IPR036259 -
Cmo13g00221 573 Pfam Major Facilitator Superfamily 340 541 IPR011701 GO:0022857|GO:0055085
Cmo13g00221 573 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 4 552 - -
Cmo13g00221 573 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 4 552 - -
Cmo13g00221 573 Pfam Nodulin-like 20 265 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00221 Cmo-Chr13:1740677 Cmo13g00228 Cmo-Chr13:1772961 0 dispersed
Cmo13g00221 Cmo-Chr13:1740677 Cmo13g00223 Cmo-Chr13:1755607 7.38E-131 proximal
Cmo13g00221 Cmo-Chr13:1740677 Cmo13g00222 Cmo-Chr13:1748704 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00221 - - csv:101204150 873.233