Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00222 ATGATCGGCGCTGGTTCAACCTACATTTTTGGAACATACTCGAAAGCAATAAAGTCGCAATTTGATTACAATCAAACACAAATCAACACATTAGGATTTGCCAAAGATCTCGGCTCAAACTTCGGAGTTTTCGCTGGCCTTCTCGGCGAAGTTGCTCCACCATGGGTTCTATTCCTCGTCGGCTCAGCTCTCAACTTCTGGAGCTACTTCATGATTTGGCTCTCCATCACCGGCCGTATCTCCAAACCCCCGTTTTGGGAAATGTTCGTTTTCATCTGCGTAGCTGCGAATTCACAAAATTTCGCCAACACCGCCATTTTGGTCACGAGCGTTCGAAACTTCCCGGACCGACGAGGCATCATTCTTGGGCTTCTCAAGGGTTTCGTTGGGTTCGGAGGTGCTATTTTGACTCAATTCTATTTAGCTCTTTACGGCCATGATAACCCAACCAATTTGGTGCTTCTTCTCTCTTGGCTACCAACCGTTGCGTCTATGTTGTTTTTTCTCTCAATTCGACCAATCAAAGTCCGTAAAGATCCAGATGAGCTTAGAGTTCTTTACCATTTGCTTTATGTGTCCATAATTTTGGCGCTGTTTCTCTTATTCTTAACCATAACCCAAAAACAAACAGTGTTTACTCAAGAAGCTTACATGAGCGGCGCCACCGTGATCATCGGCTTATTGCTTATCCCTCTTTTGATAGCCATTAGAGAAGAGTTCATGCTCTTCAAACTCAACAAACAAACCCTAAATAACAATCCTACCGTCCCCATTTTAATGCCGGAGCACGAGCCTTCCCCCAAAGCCCCACCCACAATACAGCAAATTCCCGAAGCTTCAACCTCGTGTTTCTCAATGACATTCAAAAAGCCACAAAGAGGTGAAGATTTCACCATTTTACAAGCTTTATTCAGCAAAGACATGGCGCTTGTTTTCATAGCCACACTTACTGCCTGTGGCGCATCAATTGCAGCCATTGATAACTTAGGTCAGGTTGGTGAATCACTTGGCTATCCATATCAAACAATAAGCATATTCGTTTCGTGGGTTTCGATATTCAATTTCTTCGGTCGGGTCTTCTCCGGTTTCATCTCGGAAGCGCTTATGACCAAATACAAATTACCCCGACCTCTCATGTTCGCTTTTTCCCATCTTTTAACTTGCATTGGCATTCTCTTTATTGCCTTCCCATATAAGGGTTCCGTTTATGCAGCGTCCTTGATCATTGGGTTCGGGTTTGGAGCGCAAGTTCCAATGTTGTTCGCCATAATCTCGGAACTATTCGGCCTCAAATATTATTCGACAATCTTCAATTGTGGGCAATTGGCTGTCCCAATTGGATCTTACATACTGAACGTTGATGTAATTGGGAAGTTGTATGACATTGAAGCAGCAAAGCTTGGTGGGGTTAAGAATGGGAAGGGGCTAACTTGCACGGGCACTCATTGCTTTAGTGGGTCTTTCTTGATTTTGGCTGTGGTGGTATTGTTCGGGGCGGTGGCTTCGCTTGTGTTGGCTTATAGGACTCGAGACTTTTACAAAGGCGACGTTTATAACAGGTATAGAGAGGACATGTGGATTCCTCAATCGGATATGGAATTCTATTGTATAGATGACAGGAAGAAAGGTGATGACAATTTAGCACGGATGGATATGCCGCCCAAGTATAATTTTCTCAAGTCTTAA 1686 43.95 MIGAGSTYIFGTYSKAIKSQFDYNQTQINTLGFAKDLGSNFGVFAGLLGEVAPPWVLFLVGSALNFWSYFMIWLSITGRISKPPFWEMFVFICVAANSQNFANTAILVTSVRNFPDRRGIILGLLKGFVGFGGAILTQFYLALYGHDNPTNLVLLLSWLPTVASMLFFLSIRPIKVRKDPDELRVLYHLLYVSIILALFLLFLTITQKQTVFTQEAYMSGATVIIGLLLIPLLIAIREEFMLFKLNKQTLNNNPTVPILMPEHEPSPKAPPTIQQIPEASTSCFSMTFKKPQRGEDFTILQALFSKDMALVFIATLTACGASIAAIDNLGQVGESLGYPYQTISIFVSWVSIFNFFGRVFSGFISEALMTKYKLPRPLMFAFSHLLTCIGILFIAFPYKGSVYAASLIIGFGFGAQVPMLFAIISELFGLKYYSTIFNCGQLAVPIGSYILNVDVIGKLYDIEAAKLGGVKNGKGLTCTGTHCFSGSFLILAVVVLFGAVASLVLAYRTRDFYKGDVYNRYREDMWIPQSDMEFYCIDDRKKGDDNLARMDMPPKYNFLKS 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1748704 1750389 + CmoCh13G002220.1 Cmo13g00222 394277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00222 561 Pfam Nodulin-like 4 236 IPR010658 -
Cmo13g00222 561 Gene3D MFS general substrate transporter like domains 307 513 IPR036259 -
Cmo13g00222 561 Gene3D MFS general substrate transporter like domains 1 179 IPR036259 -
Cmo13g00222 561 CDD MFS_Mch1p_like 1 499 - -
Cmo13g00222 561 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 524 - -
Cmo13g00222 561 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 1 524 - -
Cmo13g00222 561 SUPERFAMILY MFS general substrate transporter 3 511 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00217 Cmo-Chr13:1701738 Cmo13g00222 Cmo-Chr13:1748704 3.07E-54 dispersed
Cmo13g00222 Cmo-Chr13:1748704 Cmo13g00228 Cmo-Chr13:1772961 0 dispersed
Cmo13g00220 Cmo-Chr13:1733680 Cmo13g00222 Cmo-Chr13:1748704 2.27E-16 proximal
Cmo13g00222 Cmo-Chr13:1748704 Cmo13g00224 Cmo-Chr13:1757096 4.04E-16 proximal
Cmo13g00221 Cmo-Chr13:1740677 Cmo13g00222 Cmo-Chr13:1748704 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00222 - - csv:101204389 846.654