Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00227 ATGATCGGCTGTGGTTCACCTTATTTGTTCGGAACATACTCCAAACTCCTAAAAACAAAATTTGACTACAATCAAACCCAACTTAATACCTTGGGATTCGCTAAAGATCTCGGCTCCAACCTTGGAGTTTTTGCCGGGCTTTTCGCCGAGGTGGCTCCGCCGTGGATGCTTTTCCTTGTGGGGATATCCTCCAATTTCTTCAGCTACTTTATGATTTGGCTCTCTGTTTCTAACTACGTCTCGAAACCCCAATTATGGCTAATGTTTGTTTACATCTATATTACTTCTAATTCACAGAACTTCCCCAACACCGCTGTTATGGTCACCAGCGTTGGAAATTTTCCTGATCAACGCGGTATCATTTTGGGCCTTCTCAAGGGTTTCGTTGGCCTCGGTGGAGCCATCCTAACTCAAATTAATTTAGCAATTTACGGCAACCAAAATTCTATGGATCTTCTCCTCCTTCTTTCATGGCTACCCTCCATTGTATGTTCCTTGTGTTTTCTTCCAATTCGGACAATCAAAGCTCGAAAGCATCCACAGGAGCTCAAAGTGTTCTACCACTTGCTTTACGTTTCCATAGCGATAGCGGTGTTCCTCTTGTTTCTCACCATAACCCAGAGAAACATTGTTTTCTCTCAGGCTGGCTATGCCAGTGGCGTCGCGGTCATCGTCGTCTTAATCTGTCTGCCCCTTCTGATAGCCATTAAAGAAGAACTTTTTCTCTTCAAACTCGGTAAACAAACCATGAATCCTTCAGTTGTTGTTTCCCTTCCCTGCGAGCAACTTGAGGAAATTTCAAAAAATTCTTTGCCAAGTGTCTCAAATGTATGTAAGAAGCCGCAAAGGGGAGAAGATTTCAGCATCTTGCAAGCTCTTCTAAGCAAAGATATGGCTCTTATTTTCATAGCAACGGTTTCTGCATGTGGGTCGTCCGTTGCAGCCATTGATAATCTTGGGCAGATCGCCGAGTCACTTAAATATCCAAATCATTCAATAGGTATTTTGGTTTCATGGATTTCCATATTCAATTTCTTTGGTCGGGTCTTCTCCGGTTTCATCTCTGAAACCCTTATGACCAAATACAAATTACCTCGTCCTTTCATGTTCGGTCTTACCCAACTTTTCACCAGCACTGGCTTGCTCTCCATTGCATTCCCTTATATAAATTCAGTGTATGTAGCTTCGTTGATCATTGGGTTTGGCCTTGGAGCCCAAACTCCGTTGATATTCGCCATAATCTCTGATCTTTTCGGCCTCAAACATTACTCGACACTGCTCAACTGTGGGCAACTGGCTGTCCCACTTGGATCTTACATAATGAACGTGGAAGTAATAGGGAGGTTTTACGATGCAGAAGCCACTAAAATTGGAAATGTGAAGAACGGGAAGGGCCTAACTTGCACGGGAACTCATTGCTTTAGTGAATCGTTCATGATTTTGGCTGCAGTAACTTTGTTTGGAGCGATGGCTTCGTTTGTGCTAGCTTATAGAACTCGAGACTTCTACAAAGGCGATGTATATAAGAAATACAAAGATGACATGGAGGCTACGCAGTCGAACGTGGAATTAAATTCCTTCGATGACAAAAACAATGAACACAAAAAGATAACTGATGATCGAAGTAAATAA 1632 42.59 MIGCGSPYLFGTYSKLLKTKFDYNQTQLNTLGFAKDLGSNLGVFAGLFAEVAPPWMLFLVGISSNFFSYFMIWLSVSNYVSKPQLWLMFVYIYITSNSQNFPNTAVMVTSVGNFPDQRGIILGLLKGFVGLGGAILTQINLAIYGNQNSMDLLLLLSWLPSIVCSLCFLPIRTIKARKHPQELKVFYHLLYVSIAIAVFLLFLTITQRNIVFSQAGYASGVAVIVVLICLPLLIAIKEELFLFKLGKQTMNPSVVVSLPCEQLEEISKNSLPSVSNVCKKPQRGEDFSILQALLSKDMALIFIATVSACGSSVAAIDNLGQIAESLKYPNHSIGILVSWISIFNFFGRVFSGFISETLMTKYKLPRPFMFGLTQLFTSTGLLSIAFPYINSVYVASLIIGFGLGAQTPLIFAIISDLFGLKHYSTLLNCGQLAVPLGSYIMNVEVIGRFYDAEATKIGNVKNGKGLTCTGTHCFSESFMILAAVTLFGAMASFVLAYRTRDFYKGDVYKKYKDDMEATQSNVELNSFDDKNNEHKKITDDRSK 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1768272 1769903 + CmoCh13G002270.1 Cmo13g00227 394282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00227 543 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 519 - -
Cmo13g00227 543 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 1 519 - -
Cmo13g00227 543 SUPERFAMILY MFS general substrate transporter 9 501 IPR036259 -
Cmo13g00227 543 Pfam Major Facilitator Superfamily 301 498 IPR011701 GO:0022857|GO:0055085
Cmo13g00227 543 Gene3D MFS general substrate transporter like domains 298 540 IPR036259 -
Cmo13g00227 543 Pfam Nodulin-like 4 236 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00214 Cmo-Chr13:1677660 Cmo13g00227 Cmo-Chr13:1768272 0 dispersed
Cmo13g00218 Cmo-Chr13:1713289 Cmo13g00227 Cmo-Chr13:1768272 0 dispersed
Cmo13g00224 Cmo-Chr13:1757096 Cmo13g00227 Cmo-Chr13:1768272 1.65E-30 dispersed
Cmo13g00227 Cmo-Chr13:1768272 Cmo13g00228 Cmo-Chr13:1772961 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00227 - - cmos:111464768 994.571