Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00228 ATGGGCAACAAGGGAGGATCAGAAGCTTGGGCTTTCATCAAACAAGTGGTAGCAGGACGATGGTTTAGTGTATTCGCGGGACTGATAATGATGATCGGCAACGGCACCACTTACGTGTTTCCAACATATTCCAAAGTCATAAAAACCCAATTTGATTACAGCCAAACCCAAATTAACACATTGGGATTCGCCAAAGATCTCGGGTCGAACATCGGAATTATCGCGGGGCTTCTGGCGGAGGTGACTCCGACGTGGGTTCTCTTCATAATTGGGGCATTTCAAAACTTCACCGGCTTCTTCTTGATTTGGCTCTCCATAACTGCCCGGATCGCCAAGCCAAAATTCTGGCAAATGTTCATTCTGGTTTGCTTCGGTACTAATTCTTCAAATTGGGCCAACACTGCGATTATGGTGACGAGCGTGAGAAACTTCCCCGACCGACGAGGGATCATTTTGGGTCTTCTTAAAGGGTATGTGGGTATTGGAGGTGCCATCATAAGCCAACTTTATTTAGCCATTTACGGCCACAATGATCCATCCAATCTGGTTCTTCTTTTCGCATGGCTCCCCTCTCTCCTAATCCTCATCCTTTTCCCCTCAATTCGACCAATCCGTATCCGTAAGCATCCCGATGAACTCAAAGTGTTTTACCAGTTACTTTACGTCTCAATTCTTTTGGCCATTTTCATCTTGTTTTTAACCATTGCACAAAAACAAGTGGTTTTCTCTCAAGCTGGGTACGTAGGTGGCGCATCCTTTGTGGTTTGCTTACTATGCGTACCCATTTTAATCGCATGTAGAGAAGAGTTGTTGCTCTACAAACTCAACAAAGAAACCGCTGCTCCTTCTGTCGCACTCTCCATGCTTCACCAAAACCCTCCCACCCTCCCTACCTCTGCCGACTCGGAAATCCCCGAGATTTCGCCCTCGTGTTGCCCAAACATATGGAACAAGCCTGAAAGAGGGGAGGATTTCACCATCTTGCAAGCCGTGTTCAGCAAAGATATGGCTCTTATTTGCTTAGCTACATTTTCTGGATGTGGCTCCTCTCTAGCCGCTATAGATAATCTAGGTCAAGTTGGGGAATCACTTGGCTACTCACAACGAGCCATAGGCATCCTTGTTTCATGGGTTTCCATATTCAATTTCTTCGGCCGAGTTTTCTCTGGCTTCATCTCAGAAACCCTCATGACCAAATACAAGTTACCTCGTCCTCTAACCTTTGCTTTTGCCTTTCTCATCACTTGCGTTGGCCAGCTTTTCATCGCCTACCCTTTCCCAGGCTCCCTCTACTTAGCTGCCATAATTATTGGGTTTGGATTTGGAGCTCAAAATCCAATGCTATTTGCCGTAATATCTGAGATGTTTGGTCTTAAACGTTACTCCACGCTCTTCAATTGTGGGCAATTGGCAGCCCCATTTGGGTCTTACATACTCAACGTGGATGTTGTCGGGAAGCTGTACGATATGGAAGCTTTACGTGAACGTAAGCAGATTGCGGGGAAGGGGTTAACTTGCACTGGAGCTCATTGCTTTGGTGGGTCTTTCACAGTATTGGCTGCAGCCACATTGTTTGGAGCCGTGGTTATGTTTGTGTTGGCTTACCGGACTCGAGAATTCTACAAAAGGGATGTGTATAAGAACTTTAACGAGGAGATATGGATTCCACAAACCGAAATGGAGTTCTATCGCTTGGATAACAAGAAGAACATTGAGGATTAA 1722 45.76 MGNKGGSEAWAFIKQVVAGRWFSVFAGLIMMIGNGTTYVFPTYSKVIKTQFDYSQTQINTLGFAKDLGSNIGIIAGLLAEVTPTWVLFIIGAFQNFTGFFLIWLSITARIAKPKFWQMFILVCFGTNSSNWANTAIMVTSVRNFPDRRGIILGLLKGYVGIGGAIISQLYLAIYGHNDPSNLVLLFAWLPSLLILILFPSIRPIRIRKHPDELKVFYQLLYVSILLAIFILFLTIAQKQVVFSQAGYVGGASFVVCLLCVPILIACREELLLYKLNKETAAPSVALSMLHQNPPTLPTSADSEIPEISPSCCPNIWNKPERGEDFTILQAVFSKDMALICLATFSGCGSSLAAIDNLGQVGESLGYSQRAIGILVSWVSIFNFFGRVFSGFISETLMTKYKLPRPLTFAFAFLITCVGQLFIAYPFPGSLYLAAIIIGFGFGAQNPMLFAVISEMFGLKRYSTLFNCGQLAAPFGSYILNVDVVGKLYDMEALRERKQIAGKGLTCTGAHCFGGSFTVLAAATLFGAVVMFVLAYRTREFYKRDVYKNFNEEIWIPQTEMEFYRLDNKKNIED 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1772961 1774682 + CmoCh13G002280.1 Cmo13g00228 394283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00228 573 Pfam Major Facilitator Superfamily 340 540 IPR011701 GO:0022857|GO:0055085
Cmo13g00228 573 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 4 552 - -
Cmo13g00228 573 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 4 552 - -
Cmo13g00228 573 SUPERFAMILY MFS general substrate transporter 24 543 IPR036259 -
Cmo13g00228 573 Pfam Nodulin-like 20 265 IPR010658 -
Cmo13g00228 573 Gene3D MFS general substrate transporter like domains 18 210 IPR036259 -
Cmo13g00228 573 Gene3D MFS general substrate transporter like domains 335 543 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00215 Cmo-Chr13:1693628 Cmo13g00228 Cmo-Chr13:1772961 0 dispersed
Cmo13g00219 Cmo-Chr13:1719451 Cmo13g00228 Cmo-Chr13:1772961 0 dispersed
Cmo13g00221 Cmo-Chr13:1740677 Cmo13g00228 Cmo-Chr13:1772961 0 dispersed
Cmo13g00222 Cmo-Chr13:1748704 Cmo13g00228 Cmo-Chr13:1772961 0 dispersed
Cmo13g00227 Cmo-Chr13:1768272 Cmo13g00228 Cmo-Chr13:1772961 0 tandem
Cmo13g00228 Cmo-Chr13:1772961 Cmo13g00229 Cmo-Chr13:1783837 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00228 - - csv:101204150 870.922