Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00232 ATGAGCGGCGTTGAGGGGTCTCCAGGGAGCTCGATGCATGGGGTGACAGGGAGAGAGCAAACCTTTGCGTTCTCCGTGGCATCCCCAATTGTCCCAACGGATACAACAGCTAAATTTGCATTACCAGTGGACTCCGAGCACAAGGCCAAGGTGTTCAAGCTCTTCTCCTTCGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTCACTTGCTTCGTCTCCACCTTCGCCGCCGCCCCTCTTGTCCCCATCATCCGTGATAACCTCAACCTCACCAAAGTCGACATTGGCAACGCCGGCGTCACCTCCGTCTCCGGCAGCATCTTCTCTCGTCTTGTCATGGGCGCCGTCTGCGACCTTCTCGGCCCTCGCTACGGCTGCGCCTTTCTCATCATGCTCTCCGCCCCCACCGTCTTCTGCATGTCCTTCGTCTCCGACGCCGCTGGCTACATCGCCGTCCGCTTCATGATCGGCTTCTCCCTCGCCACCTTCGTCTCCTGCCAGTACTGGATGAGCACCATGTTCAACAGCCAGATCATCGGCCTCGTCAACGGCACCGCCGCCGGCTGGGGCAACATGGGCGGAGGAGCCACCCAGCTCATCATGCCCTTGCTCTATGACATCATCAAGAGAGCCGGCGCTACTCCCTTCACTGCCTGGCGGATTGCCTTCTTCATCCCTGGGTGGCTTCATGTCATCATGGGCATCTTGGTTCTCACTCTCGGCCAGGACTTGCCCGATGGCAACCTTAGCAGCCTTCAGAAGAAGGGTGACGTTGCCAAGGATAAATTCTCCAAGGTCCTTTGGTATGCCATCACCAACTATCGAACTTGGATCTTCGTCCTCCTCTACGGCTACTCCATGGGCGTCGAGCTCTCCACCGACAACGTCATTGCCGAGTATTTCTACGACAGGTTCGATCTAAAGCTGCACACGGCCGGGATCATCGCAGCCACGTTCGGAATGGCCAATCTAGTGGCTCGGCCGTTCGGAGGGTATGCGTCGGACTTTGCGGCGCGATACTTCGGGATGAGGGGAAGGCTGTGGACTCTATGGATCCTGCAGACATTCGGGGGAGTGTTCTGCATGTGGCTAGGGAAGGCGGACAAGCTCCCAACAGCCATAGCGGCAATGATATTGTTCTCAATAGGAGCACAGGCTGCGTGTGGAGCCACATTTGGGATCATTCCCTTCATTTCTAGGCGGTCTCTAGGGATCATATCAGGGCTGACAGGAGCAGGAGGGAACTTTGGGTCTGGCTTGACTCAGTTAGTGTTCTTCTCAACCACCAAATACTCCACGGACAAAGGGCTGTTCTTGATGGGGATAATGATTGTGTGTTGCACTCTTCCAGTCACTTTGGTTCACTTCCCTCAATGGGGAAGCATGTTCTTACCCCCAACCAAACACGTTGAGAAGTCCACTGAGGAATTCTATTACGGCGCTGAATGGACTGAGGATGAAAAGAAGAAGGGTTTGCACCAACAAAGCATCAAGTTCGCTGAGAACAGCCGGTCTGAACGTGGAAGGCGCGTTGGCTCAGCCCCAACCCCACCAAACACCACTCCTTCCCATGTTTGA 1593 55.43 MSGVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDIIKRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLSSLQKKGDVAKDKFSKVLWYAITNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDFAARYFGMRGRLWTLWILQTFGGVFCMWLGKADKLPTAIAAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDKGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHVEKSTEEFYYGAEWTEDEKKKGLHQQSIKFAENSRSERGRRVGSAPTPPNTTPSHV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1828434 1830419 + CmoCh13G002320.1 Cmo13g00232 394287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00232 530 MobiDBLite consensus disorder prediction 492 530 - -
Cmo13g00232 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
Cmo13g00232 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Cmo13g00232 530 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
Cmo13g00232 530 Gene3D MFS general substrate transporter like domains 57 254 IPR036259 -
Cmo13g00232 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Cmo13g00232 530 MobiDBLite consensus disorder prediction 492 513 - -
Cmo13g00232 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Cmo13g00232 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01836 Cmo-Chr4:9226493 Cmo13g00232 Cmo-Chr13:1828434 0 dispersed
Cmo13g00232 Cmo-Chr13:1828434 Cmo13g00233 Cmo-Chr13:1836344 1.45E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00232 K02575 - csv:101218244 1037.71