Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00245 ATGGAACATAGTTATGGATTTGAACATGTCGCTCAACAAAGCCGGCGTGATAAGCTAAGAGTATCAAGAAACTCTGATGAATTATTGAGTTTTCAAAACTCAGGGCATTCTGGTTTGGATCTAGATCTTGTTAGAATTCAAAATTTAAACAAGAATTCGATTTTGCCTTCAGTTATGATCAATTTCTCTAGAGATTCGGACATAATGTTGAGCCAAGAACTTGTGGGAGATGCTTCGTTGGGTTCTGTTTCCAATTATTGGAAAACTTCTGATTGGGAGATGAACTGTGGAAATAATTGTTTGGGAGGTGAAATGTTGAATGATTCCACAGTTTATACACTTCAAGATGTTGTTAACCAAACTGCTGCTCGTGAAGGCCGTGGAAATGAGCCAAACGTGTTGCCTTATGACACTACTGGTTTTGTGAGTGATTCCAATCCACAACGTCTAGCGCTGTCTCTGTCTTCTAATACACAGTTTCAAGAATCAGAGGAATCCAAAACAGTCAAATCTGAAACTATTGGTAACAAAAATTATGGGAAATCTCTTCAAAATATGATGGGAGTTTCTGTGAATCCATATAGAAACACTGGTCCTCTTGGTCCCTTTACTGGGTATGCCACCATTTTAAAGAGTTCCAAATTCTTAAAGCCTGCTCAACTTTTGTTAGACGAATTTTGTAGCTCAAATGCTCATAAATTTGTCCAACCATGTGAGGCCTCACCTGCCCTTAATGCAGATGATGAAACAAATATTAGTGGCGTTGGGAGCATTTTCTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAGGCAAAACTTCTATATATGCTCGACGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTGTCAGCGTTTGAATCAGTAGCTGGTCTTAGTTCTGCGACGCCTTACATTTCTCTGGCGCTTAAGACAGTGTCAAGACACTTCCAGTCTCTAAAGAATGCCATCTCCGAACAATTGAAGTATCTGAGGAAGGTAGTTGGTGAGAATTCGTCGTCCATCTCTGCTGGGACTAGCGGTAGGAAATACATTGAACAGAGCTTCCAAAAGCAAAAAACTGGCATTGTTAATATCGGATTCCTCGAATCCCAAAATGTTTGGAGGCCGCAGAGGGGCTTGCCTGAACGTGCTGTTGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCGTACCCCACGGACACAGATAAACACATGTTGGCCACTCAAACAGGCTTATCTCGAAACCAGGTGTCGAATTGGTTCATAAATGCACGAGTGCGGGTGTGGAAGCCAATGGTAGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACACCAAAGGCCAAGTAACAATAGAAAACACACCCGGTTGGACCAGTAGTGAACAACAGCCTCTAAAAAGCCATGGTGTTGTGAATGAAATTATTACTAGTCAGTGGGATCAAGGCAAACCATCCAAATTGGACAATGGGGTTCAGTCCAACACGGAAGGAGAATTGATGGGGTTCGTGCCATATCGAGCCAGCACAGTCGACGTCGGAGGAGCCGGAGCTGTCTCTCTAACATTAGGCCTTCGCCACCGAGTCGAGAGCGCACACCATCAACAGCAGCAACAAGATGAGCAACTACTACGCCATTATGGAAGTGAAATGATCCATGATTTTGTGGGGTAA 1713 42.73 MEHSYGFEHVAQQSRRDKLRVSRNSDELLSFQNSGHSGLDLDLVRIQNLNKNSILPSVMINFSRDSDIMLSQELVGDASLGSVSNYWKTSDWEMNCGNNCLGGEMLNDSTVYTLQDVVNQTAAREGRGNEPNVLPYDTTGFVSDSNPQRLALSLSSNTQFQESEESKTVKSETIGNKNYGKSLQNMMGVSVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCSSNAHKFVQPCEASPALNADDETNISGVGSIFSESHQPEYQQKKAKLLYMLDEVCRRYKQYHQQMQMVVSAFESVAGLSSATPYISLALKTVSRHFQSLKNAISEQLKYLRKVVGENSSSISAGTSGRKYIEQSFQKQKTGIVNIGFLESQNVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNTKGQVTIENTPGWTSSEQQPLKSHGVVNEIITSQWDQGKPSKLDNGVQSNTEGELMGFVPYRASTVDVGGAGAVSLTLGLRHRVESAHHQQQQQDEQLLRHYGSEMIHDFVG 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2012539 2015825 + CmoCh13G002450.1 Cmo13g00245 394300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00245 570 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Cmo13g00245 570 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 131 542 - -
Cmo13g00245 570 Gene3D - 384 446 - -
Cmo13g00245 570 CDD homeodomain 381 442 IPR001356 GO:0003677
Cmo13g00245 570 SMART prehox3 204 332 IPR006563 -
Cmo13g00245 570 SUPERFAMILY Homeodomain-like 383 448 IPR009057 -
Cmo13g00245 570 SMART HOX_1 381 445 IPR001356 GO:0003677
Cmo13g00245 570 Pfam Associated with HOX 209 331 IPR006563 -
Cmo13g00245 570 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Cmo13g00245 570 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 131 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00411 Cmo-Chr3:4872357 Cmo13g00245 Cmo-Chr13:2012539 7.39E-75 dispersed
Cmo06g00271 Cmo-Chr6:1371446 Cmo13g00245 Cmo-Chr13:2012539 2.11E-80 dispersed
Cmo07g01064 Cmo-Chr7:5426177 Cmo13g00245 Cmo-Chr13:2012539 1.88E-75 dispersed
Cmo13g00245 Cmo-Chr13:2012539 Cmo14g00358 Cmo-Chr14:1624151 6.32E-71 dispersed
Cmo14g00104 Cmo-Chr14:480107 Cmo13g00245 Cmo-Chr13:2012539 1.17E-08 dispersed
Cmo01g00536 Cmo-Chr1:2636510 Cmo13g00245 Cmo-Chr13:2012539 2.48E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10808 PF07526 POX 4.60E-41 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00245 - - cmax:111469309 1083.94