Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00264 ATGCCTTTCTCTTCTGATTTCCATTCAACTTCCCTCCTTTACAACCTCTCAATTTTGAAGGACAAGCTCCACCAAATCCAATCCGTTGTCTCCGTCGTCGTCTACGACTTTCAAAACTCGACCGAGTCCCTCCCTCGAGACTTGTCGCAGTTACCAACGGTCAACTCTCTGATCCAGGAACTCATCATGGCTGCTTCTTCCATGTTGTTCACATGTCAAGAGATGAATAACTTCGCTCTGAACTCGTCGTTACATAACGATGTTGTCGATAATAATCTCCATGGTCTTGTTGACAACGATAATCGACCATCCATTGCCCTTCTCGACGTGGCCAATGATCATCGGCATCATCAGAACTGGTACAACATGACATCTACTACTAATAACGACGACAACGACAACAATAGCAGTAGAGTAACGACAACGAAAACAACACAAGATTATCGAACTTCAATCGATATCGTTGAGCTAGACGCAACAGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCGAACCTACGAATGCACATGCGAGCACACGGGGACGAGTACAAAGCGAGCGGGGCGTTGAGTAACCTGGAGAAGAGTCATAGAAGGGATATGAACATAAACAAGAAATTAGGGACCAAATACTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAACATGCCAAGTTTCAGCCATTGAAATCACTGATTTGTGTGAAAAATCATTACAAGAGAACCCATTGCCCCAAAATGTATGTCTGCAAGCTCTGCAGTGGCAAGAAATTTTCAGTGCTATCAGATTTGAGGACTCATGAGAAACATTGTGGAGACATGAAATGGGTTTGTTCTTGTGGCACCACATTTTACAGGAAAGATAAGCTCATGGGTCATGTCGCTCTGTTTGTCGGGCATGCCCCGGTGATCAGTTCGTCTGTAAGAGCCTAG 966 44.93 MPFSSDFHSTSLLYNLSILKDKLHQIQSVVSVVVYDFQNSTESLPRDLSQLPTVNSLIQELIMAASSMLFTCQEMNNFALNSSLHNDVVDNNLHGLVDNDNRPSIALLDVANDHRHHQNWYNMTSTTNNDDNDNNSSRVTTTKTTQDYRTSIDIVELDATDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNLEKSHRRDMNINKKLGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSGKKFSVLSDLRTHEKHCGDMKWVCSCGTTFYRKDKLMGHVALFVGHAPVISSSVRA 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2191858 2192950 + CmoCh13G002640.1 Cmo13g00264 394319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00264 321 Pfam Zinc finger, C2H2 type 168 190 IPR013087 -
Cmo13g00264 321 SMART c2h2final6 259 281 IPR013087 -
Cmo13g00264 321 SMART c2h2final6 168 190 IPR013087 -
Cmo13g00264 321 SMART c2h2final6 221 254 IPR013087 -
Cmo13g00264 321 SUPERFAMILY beta-beta-alpha zinc fingers 166 193 IPR036236 -
Cmo13g00264 321 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 5 318 IPR044300 GO:0010044|GO:0010447
Cmo13g00264 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Cmo13g00264 321 MobiDBLite consensus disorder prediction 121 143 - -
Cmo13g00264 321 PANTHER OS08G0562300 PROTEIN 5 318 - -
Cmo13g00264 321 Gene3D Classic Zinc Finger 257 307 - -
Cmo13g00264 321 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Cmo13g00264 321 Gene3D Classic Zinc Finger 141 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01158 Cmo-Chr9:7299396 Cmo13g00264 Cmo-Chr13:2191858 5.16E-71 dispersed
Cmo13g00264 Cmo-Chr13:2191858 Cmo04g02100 Cmo-Chr4:13168839 7.58E-26 dispersed
Cmo13g00264 Cmo-Chr13:2191858 Cmo01g00971 Cmo-Chr1:6226646 1.05E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10809 PF00096 zf-C2H2 7.90E-05 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00264 - - cmos:111464900 650.973