Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00264 | ATGCCTTTCTCTTCTGATTTCCATTCAACTTCCCTCCTTTACAACCTCTCAATTTTGAAGGACAAGCTCCACCAAATCCAATCCGTTGTCTCCGTCGTCGTCTACGACTTTCAAAACTCGACCGAGTCCCTCCCTCGAGACTTGTCGCAGTTACCAACGGTCAACTCTCTGATCCAGGAACTCATCATGGCTGCTTCTTCCATGTTGTTCACATGTCAAGAGATGAATAACTTCGCTCTGAACTCGTCGTTACATAACGATGTTGTCGATAATAATCTCCATGGTCTTGTTGACAACGATAATCGACCATCCATTGCCCTTCTCGACGTGGCCAATGATCATCGGCATCATCAGAACTGGTACAACATGACATCTACTACTAATAACGACGACAACGACAACAATAGCAGTAGAGTAACGACAACGAAAACAACACAAGATTATCGAACTTCAATCGATATCGTTGAGCTAGACGCAACAGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCGAACCTACGAATGCACATGCGAGCACACGGGGACGAGTACAAAGCGAGCGGGGCGTTGAGTAACCTGGAGAAGAGTCATAGAAGGGATATGAACATAAACAAGAAATTAGGGACCAAATACTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAACATGCCAAGTTTCAGCCATTGAAATCACTGATTTGTGTGAAAAATCATTACAAGAGAACCCATTGCCCCAAAATGTATGTCTGCAAGCTCTGCAGTGGCAAGAAATTTTCAGTGCTATCAGATTTGAGGACTCATGAGAAACATTGTGGAGACATGAAATGGGTTTGTTCTTGTGGCACCACATTTTACAGGAAAGATAAGCTCATGGGTCATGTCGCTCTGTTTGTCGGGCATGCCCCGGTGATCAGTTCGTCTGTAAGAGCCTAG | 966 | 44.93 | MPFSSDFHSTSLLYNLSILKDKLHQIQSVVSVVVYDFQNSTESLPRDLSQLPTVNSLIQELIMAASSMLFTCQEMNNFALNSSLHNDVVDNNLHGLVDNDNRPSIALLDVANDHRHHQNWYNMTSTTNNDDNDNNSSRVTTTKTTQDYRTSIDIVELDATDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNLEKSHRRDMNINKKLGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSGKKFSVLSDLRTHEKHCGDMKWVCSCGTTFYRKDKLMGHVALFVGHAPVISSSVRA | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2191858 | 2192950 | + | CmoCh13G002640.1 | Cmo13g00264 | 394319 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00264 | 321 | Pfam | Zinc finger, C2H2 type | 168 | 190 | IPR013087 | - | |
Cmo13g00264 | 321 | SMART | c2h2final6 | 259 | 281 | IPR013087 | - | |
Cmo13g00264 | 321 | SMART | c2h2final6 | 168 | 190 | IPR013087 | - | |
Cmo13g00264 | 321 | SMART | c2h2final6 | 221 | 254 | IPR013087 | - | |
Cmo13g00264 | 321 | SUPERFAMILY | beta-beta-alpha zinc fingers | 166 | 193 | IPR036236 | - | |
Cmo13g00264 | 321 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 5 | 318 | IPR044300 | GO:0010044|GO:0010447 | |
Cmo13g00264 | 321 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 168 | 195 | IPR013087 | - | |
Cmo13g00264 | 321 | MobiDBLite | consensus disorder prediction | 121 | 143 | - | - | |
Cmo13g00264 | 321 | PANTHER | OS08G0562300 PROTEIN | 5 | 318 | - | - | |
Cmo13g00264 | 321 | Gene3D | Classic Zinc Finger | 257 | 307 | - | - | |
Cmo13g00264 | 321 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 170 | 190 | IPR013087 | - | |
Cmo13g00264 | 321 | Gene3D | Classic Zinc Finger | 141 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g01158 | Cmo-Chr9:7299396 | Cmo13g00264 | Cmo-Chr13:2191858 | 5.16E-71 | dispersed | |
Cmo13g00264 | Cmo-Chr13:2191858 | Cmo04g02100 | Cmo-Chr4:13168839 | 7.58E-26 | dispersed | |
Cmo13g00264 | Cmo-Chr13:2191858 | Cmo01g00971 | Cmo-Chr1:6226646 | 1.05E-76 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10809 | PF00096 | zf-C2H2 | 7.90E-05 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00264 | - | - | cmos:111464900 | 650.973 |