Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00275 ATGGCGCTCTATCCATCCCTACAACTCATTCGATTCCCTCCTCAAGCACTCTCCTCGTCCTCTCGCCACCTTCTCATTTCTGACCTCGGCTCCGTATCGCGCTTCTTCCGATCTCCATGGCTTTCCTCTTTGCCTCCGTCGCGGAAGTGCAGGATGATTTTATCTTCCAGGACCAAGTGTTTCTCCATGTCCACTGAGGAGGATCAGTGGAGTGAATCGGAAGCGTTGATGTCCGATGTTGACGAAGGGGGAGATCGTGAGGATGATATTGGTGTTCAGCAAGAAAGCTCTGTGGTCTCTGCTGCTTCTGCGCAGAGGATTTCTTCCTCGTCGCCGAGTGATTATCTGTCGCTTGCGATTCGTGAGTCGGTTTATGAGGTATTAGAGGTTAAAGCCAATGGTGCCGTATCTACTAGGAAGATAAACAGACGTCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTCCGGAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAAAATGCTATTTTACTTAATCTGGGATCGCTGCGAGCAATAGCTATGCCGGACTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAGGCTTTTATTGAATCATTGTTGCCACGATTGAACCCAAAAAGCATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACACAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGCATCAGCAAGCAGACTTTGGTAGAATTAGGTTCCAGGGCAGGGGCTCTTAGACAAATGCTTCTTGATCTTCTGGAGGACCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGATTAATAAAGGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGGAGATTGCTGATGACGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCGGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCTATTGCCGTCAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGAGTAGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCTGTTGGCGCTCTGGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTTTTGGCGCTGTTGTGGCATTCTTTCTCATGTATTCGTATCTCAGAGATAGGAGAATCCTATAG 1365 46.08 MALYPSLQLIRFPPQALSSSSRHLLISDLGSVSRFFRSPWLSSLPPSRKCRMILSSRTKCFSMSTEEDQWSESEALMSDVDEGGDREDDIGVQQESSVVSAASAQRISSSSPSDYLSLAIRESVYEVLEVKANGAVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVRENAILLNLGSLRAIAMPDCVLIFDYNRPGGQAFIESLLPRLNPKSMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTINKGNDDVECSLPLDKEIADDEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIFGAVVAFFLMYSYLRDRRIL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2237131 2256281 - CmoCh13G002750.1 Cmo13g00275 394330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00275 454 Gene3D - 117 201 - -
Cmo13g00275 454 Coils Coil 334 354 - -
Cmo13g00275 454 CDD Mrs2_Mfm1p-like 127 453 IPR039204 -
Cmo13g00275 454 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 41 454 - -
Cmo13g00275 454 Gene3D Magnesium transport protein CorA, transmembrane region 204 385 - -
Cmo13g00275 454 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 41 454 IPR039204 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00275 Cmo-Chr13:2237131 Cmo04g00575 Cmo-Chr4:2868516 1.17E-20 dispersed
Cmo13g00275 Cmo-Chr13:2237131 Cmo13g00277 Cmo-Chr13:2276986 0 proximal
Cmo12g00817 Cmo-Chr12:7350047 Cmo13g00275 Cmo-Chr13:2237131 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00275 K16075 - csv:101219314 710.294