Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00276 ATGTCTAGTGGGCGCGGTGGTCGTGGTCGTGGTGCCGGAGGTCGTGGAGGGCAGTCATCTCCGGCAATTTCTCGCGGTGGTGGTGGTAGAAGTGGCGGAGGTAGAGGTGGTCAAGGCGGTGGTGGAAGAGGTGGTCAAGGCGGTGGGGGAAGAGGTGGTCGAGGCGGCGGTGGGAGAGATGGAGGTCGGGTGGATCATCCGGCTACACAGCAGTTTCCTTCTCCGACTCCTCAGCCTACTCCGGTTGCTTCCCGTCCTCCACTCGAGACATCTGCGGGAGCATCTTCTTCATCTTCTACAACTGCTGCTCTTTCACAGCCGGAGGCTTCTTCTTCGAGGATCGAGGCACAGTTGGAGAAGACATTGGTACTGCAGAATGTTCCGCCGTCTTCATCTAAGGCTATGACTGTGGCTAAGAGACCGGGATATGGAACCATTGGGCGCAAAGTTGTTGTTCGGGCTAATCATTTTCTGGTACAAGTTGAAGATAAAGATCTCTACCATTACGATGTTTCTATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGACATAATACACCAGCTTGCAAAAATGTACAAAGAATCTCATTTAGGTGGAAGATTTCTAGCATATGATGGTGGGAAAAGTGTTTATGTTGCTGGTGAACTTCCATTTGTGTCCAAAGAGTTTCTTATTAAATTAGTCCGTAATGATGATGCCGGGTCTTCTCAACCAAAAAGGAAAGAACGTGAATTCAAAGTAACTATCAAATTTGCTTCCAAGCCAGACCTCAATCATCTACAACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAAGAAACTATCCAAGTTCTTGATGTAGTTCTGAGAACTACACCATCTATCCATTGCACAGTTGTTGGAAGGTCATTTTTCTCAACCGAGTTCGGAAAACCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGAGGATATTATCAAAGTCTGCGACCTGTACAAATGGGTCTATCTTTAAATATAGATGTGTCAGCCAGATCATTTTATGAACCAATATATGTGACAGATTATATTGCTAAACATTTCAATTTGAGGAATTTGCGAACAGCAACTGATCAGGATTTCCGGAAGATAAAAAAAGTACTCAGAGGTGTGAAGGTGGCATTAATGTGTGGGGAGCATGCCAGGACGTACAAAATTACTGGGATATCATCAGAGCCTGTAGACAGATTA 1218 45.89 MSSGRGGRGRGAGGRGGQSSPAISRGGGGRSGGGRGGQGGGGRGGQGGGGRGGRGGGGRDGGRVDHPATQQFPSPTPQPTPVASRPPLETSAGASSSSSTTAALSQPEASSSRIEAQLEKTLVLQNVPPSSSKAMTVAKRPGYGTIGRKVVVRANHFLVQVEDKDLYHYDVSITPEVTSKKVCRDIIHQLAKMYKESHLGGRFLAYDGGKSVYVAGELPFVSKEFLIKLVRNDDAGSSQPKRKEREFKVTIKFASKPDLNHLQQFLHGRQRDAPQETIQVLDVVLRTTPSIHCTVVGRSFFSTEFGKPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPIYVTDYIAKHFNLRNLRTATDQDFRKIKKVLRGVKVALMCGEHARTYKITGISSEPVDRL 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2260082 2262225 - CmoCh13G002760.1 Cmo13g00276 394331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00276 406 Pfam Argonaute linker 1 domain 296 345 IPR014811 -
Cmo13g00276 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 47 401 - -
Cmo13g00276 406 MobiDBLite consensus disorder prediction 89 112 - -
Cmo13g00276 406 SUPERFAMILY PAZ domain 149 402 IPR036085 GO:0005515
Cmo13g00276 406 Pfam N-terminal domain of argonaute 148 285 IPR032474 -
Cmo13g00276 406 MobiDBLite consensus disorder prediction 1 112 - -
Cmo13g00276 406 SMART DUF1785_2 294 346 IPR014811 -
Cmo13g00276 406 Gene3D paz domain 341 406 - -
Cmo13g00276 406 PANTHER PROTEIN ARGONAUTE 1A 47 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00276 Cmo-Chr13:2260082 Cmo01g00803 Cmo-Chr1:4221278 7.72E-88 dispersed
Cmo13g00276 Cmo-Chr13:2260082 Cmo13g00278 Cmo-Chr13:2286548 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00276 K11593 - cmos:111464815 698.353