Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00278 ATGTCTAGTGGGCGCGGTGGTCGTGGTCGTGGTGCCGGAGGTCGTGGAGGGCAGTCATCTCCGGCAATTTCTCGCGGTGGTGGTGGTAGAAGTGGCGGAGGTAGAGGTGGTCAAGGCGGTGGTGGAAGAGGTGGTCAAGGCGGTGGGGGAAGAGGTGGTCGAGGCGGCGGTGGGAGAGATGGAGGTCGGGTGGATCATCCGGCTACACAGCAGTTTCCTTCTCCGACTCCTCAGCCTACTCCGGTTGCTTCCCGTCCTCCACTCGAGACTTCTGCGGGAGCATCTTCTTCATCTTCTACAACTGCTGCTCTTTCACAGCCGGAGGCTTCTTCTTCGAGGATCGAGGCACAGTTGGAGAAGACATTGGTACTGCAGAATGTTCCGCCGTCTTCATCTAAGGCTATGACTGTGGCTAAGAGACCGGGATATGGAACCATTGGGCGCAAAGTTGTTGTTCGGGCTAATCATTTTCTGGTACAAGTTGAAGATAAAGATCTCTACCATTACGATGTTTCTATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGACATAATACACCAGCTTGCAAAAATGTACAAAGAATCTCATTTAGGTGGAAGATTTCTAGCATATGATGGTGGGAAAAGTGTTTATGTTGCTGGTGAACTTCCATTTGTGTCCAAAGAGTTTCTTATTAAATTAGTCCGTAATGATGATGCCGGGTCTTCTCAACCAAGAAGGAAAGAACGTGAATTCAAAGTAACTATCAAATTTGCTTCCAAGCCAGACCTCAATCATCTACGACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAAGAAACTATTCAAGTTCTTGATGTAGTTCTGAGAACTACACCATCTATCCATTGCACAGTTGTTGGAAGGTCATTTTTCTCAACCGAGTTCGGAAAACCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGAGGATATTATCAAAGTCTGCGACCTGTACAAATGGGTCTATCTTTAAATATAGATGTGTCAGCCAGATCATTTTATGAACCAATATATGTGACAGATTATATTGCTAAACATTTCAATTTGAGGAATTTGCGAACAGCAACTGATCAGGATTTCCGGAAGATAAAAAAAGTACTCAGAGGTGTGAAGGTGGCATTAATGTGTGGGGAGCATGCCAGGACGTACAAAATTACTGGGATATCATCAGAGCCTGTAGACAGATTAATGTTTACTCTTGATAATCAGAGTACCCGAATCTCTGTTAGTCAATACTTTCTTGAAAAATATGGTGTTAAGCTCAGGTCAGCATTTCTACCTGCTATTCAAGCTGGTAATGATGCAAAGCCCATCTATTTGCCTATGGAGCTTTGTAGAATTGTTAACGGGCAGAGATATACCAAAAAGTTGAATGAACGGCAAGTAACTGAGCTGTTAAGAGCGACTTGTCAGAGACCTGAGAATAGGGAATGGAGTATAAAGACGATGGTTGAAGGGAATCGGTATAATACTGATGACATTGTTAAGGATTTTGGCATTGAAGTTAGATCAGAGTTATGTAATGTTGATGCTCGTGTTTTGCCATCCCCATCGCTCAGTTATCATGAAACAGGTGGAGAATCAAGGGTTGATCCACGGATGGGTCAGTGGAATATGATTAATAAGAAAATGATCAATGGTGGTACAGTAGAACATTGGGCATGTGTGACTTTCTCCTCACGGTTGGATAAAGATTTGCCATCTGAATTTTGCAAGCAGTTGGTTAACATGTGCAGAAGCAAAGGAATTGCTTTTGCCCTTGCTCCGTTGTTTCCCATACGTGCTGCACATCCAAATCAAATTGACACTACGCTTAGAGGTATTCATAAGGACTCTGTAAACATTTTGGGACCCAAGGGCAAGTCTCTTCAGCTACTCATAATTATTTTACCTGATGTTACTGGTTCTTATGGGAAGATTAAAAGGATTTGCGAGACAGAACTCGGAATTGTTTCACAATGTTGCCAGCCTAAGCAGGCACAGAAGCTAAACAAGCAATATTTTGAAAATGTGGCTCTTAAAATCAACGTTAAGGTTGGGGGAAGAAACAATGTCCTAACTGATGCTATTCTTCGGAAAATTCCTGTTGTCTCGGAGAAGCCTACAATAATCTTTGGAGCAGATGTCACGCACCCGCAACCAGGAGAGGACTCTAGTCCTTCAATAGCAGCTGTTGTCGCCTCCATGGACTGGCCTGAGGTAACAAAGTATAGGGGTATTGTTTCAGCCCAAGCTCACCGTGAAGAAATTATACAAGATTTGTACAAACAATTTGAAGATCCTCAAAGAGGGTTGGTGCATGCAGGGATGATTAGGGAGCTTTTCATTGCATTTAGAAGGTCAACGAATTTGAAACCGCACAGAATAATATTCTACAGGTCTGTTATTTTTTTAGATGGTGTAAGTGAGGGACAATTCTCTCAAGTTCTACTTTATGAGATGGATGCAATCAGGAAGGCATGTGCCTCCCTTGAAGCGGATTACCAACCTCCGGTTACCTTTATAGTCGTGCAAAAGAGGCATCATACTCGTCTTTTCCCCACCAGCCGCGATACTGATCGGAGTGGAAACATCCTTCCGGGTACTGTTGTTGATACCAAAATTTGTCATCCAACTGAATTTGATTTCTATTTAAACAGCCATGCCGGCATACAGGGAACGAGTAGACCGACACATTATCACGTTCTATTCGACGAAAACAATTTCAGTGCGGATGCGATGCAAATGCTTACCAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCCCCAGCATACTATGCCCATCTAGCAGCTTTTCGAGCTCGTCACTACATGGAGGGTGATGCATCCGATAGCGGTTCCACGGGTTTGGGCGGTGGGATTGTTCAGGTTCAGCAGATGCCGAACGTAAGGGAGAATGTGAAGGATGTTATGTTTTACTGCTGA 2976 44.02 MSSGRGGRGRGAGGRGGQSSPAISRGGGGRSGGGRGGQGGGGRGGQGGGGRGGRGGGGRDGGRVDHPATQQFPSPTPQPTPVASRPPLETSAGASSSSSTTAALSQPEASSSRIEAQLEKTLVLQNVPPSSSKAMTVAKRPGYGTIGRKVVVRANHFLVQVEDKDLYHYDVSITPEVTSKKVCRDIIHQLAKMYKESHLGGRFLAYDGGKSVYVAGELPFVSKEFLIKLVRNDDAGSSQPRRKEREFKVTIKFASKPDLNHLRQFLHGRQRDAPQETIQVLDVVLRTTPSIHCTVVGRSFFSTEFGKPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPIYVTDYIAKHFNLRNLRTATDQDFRKIKKVLRGVKVALMCGEHARTYKITGISSEPVDRLMFTLDNQSTRISVSQYFLEKYGVKLRSAFLPAIQAGNDAKPIYLPMELCRIVNGQRYTKKLNERQVTELLRATCQRPENREWSIKTMVEGNRYNTDDIVKDFGIEVRSELCNVDARVLPSPSLSYHETGGESRVDPRMGQWNMINKKMINGGTVEHWACVTFSSRLDKDLPSEFCKQLVNMCRSKGIAFALAPLFPIRAAHPNQIDTTLRGIHKDSVNILGPKGKSLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPKQAQKLNKQYFENVALKINVKVGGRNNVLTDAILRKIPVVSEKPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKQFEDPQRGLVHAGMIRELFIAFRRSTNLKPHRIIFYRSVIFLDGVSEGQFSQVLLYEMDAIRKACASLEADYQPPVTFIVVQKRHHTRLFPTSRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARHYMEGDASDSGSTGLGGGIVQVQQMPNVRENVKDVMFYC 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2286548 2293397 - CmoCh13G002780.1 Cmo13g00278 394333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00278 991 CDD PAZ_argonaute_like 349 458 - -
Cmo13g00278 991 Pfam Argonaute linker 1 domain 296 345 IPR014811 -
Cmo13g00278 991 Gene3D paz domain 341 463 - -
Cmo13g00278 991 SMART Piwi_a_2 635 956 IPR003165 GO:0003676
Cmo13g00278 991 SMART PAZ_2_a_3 349 481 IPR003100 GO:0005515
Cmo13g00278 991 PANTHER ARGONAUTE1 40 973 - -
Cmo13g00278 991 SUPERFAMILY Ribonuclease H-like 630 956 IPR012337 -
Cmo13g00278 991 MobiDBLite consensus disorder prediction 1 112 - -
Cmo13g00278 991 CDD Piwi_ago-like 504 955 IPR045246 -
Cmo13g00278 991 Pfam Argonaute linker 2 domain 486 531 IPR032472 -
Cmo13g00278 991 Pfam Mid domain of argonaute 542 620 IPR032473 -
Cmo13g00278 991 MobiDBLite consensus disorder prediction 89 112 - -
Cmo13g00278 991 Gene3D - 523 697 - -
Cmo13g00278 991 Pfam PAZ domain 362 475 IPR003100 GO:0005515
Cmo13g00278 991 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 40 973 - -
Cmo13g00278 991 SMART DUF1785_2 294 346 IPR014811 -
Cmo13g00278 991 Pfam Piwi domain 637 955 IPR003165 GO:0003676
Cmo13g00278 991 Pfam N-terminal domain of argonaute 148 285 IPR032474 -
Cmo13g00278 991 Gene3D - 704 991 IPR036397 GO:0003676
Cmo13g00278 991 ProSiteProfiles PAZ domain profile. 387 459 IPR003100 GO:0005515
Cmo13g00278 991 ProSiteProfiles Piwi domain profile. 635 956 IPR003165 GO:0003676
Cmo13g00278 991 SUPERFAMILY PAZ domain 343 499 IPR036085 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00278 Cmo-Chr13:2286548 Cmo14g01794 Cmo-Chr14:13773102 0 dispersed
Cmo20g00015 Cmo-Chr20:134812 Cmo13g00278 Cmo-Chr13:2286548 2.59E-116 dispersed
Cmo13g00276 Cmo-Chr13:2260082 Cmo13g00278 Cmo-Chr13:2286548 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00278 K11593 - csv:116403995 1504.96