Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00317 ATGGCTTCAACCATCATGTTCTTATTCTCCGGTGCCTCCGACCACCTACTCCACTCTCTCCCCTCCCTTATCTCCATCCTATTCTTCTCCTTCACGGCGGCCTTCACGGTGTTCTCCTTCTCTTTGTTCATCCTCCGCCTTAGACCCTGCTGCAACTGCCCCATCTGCCACTCCTACCTCTCCTCCACATGGCTCTCCTCCTTCCCCAACTTATCCGATTGGTACGCCCACCTCCTCTCCCACTCCCCCACCGCCACCATCACCATCCACGTCCTCTCCAACATCCTCACCGCCAACCCCGACAACGTCCACCACATCCTCAAAACCAACTTCCACAACTACCCAAAAGGCAAGCCCTTCTCCTCCATCCTCGGCGACCTCCTCGGCCAAGGCATCTTCAACGTCGACGGCCACTCCTGGACCTTCCAACGCAAAATGGCTAGCTTGGAGCTCGGCAGCCTCTCCGTCCGCTCCCACGCCTTCCACATCCTAACCTCCCAGATTCAAACAAGGCTGCTTCCGGTCCTGTGTTCGAATCACGGCATGCTGGATTTACAGGATATTTTTAAACGATTTTCTTTTGATAATATTTGTCGATTCTCCTTTGGGTTGGACCCTGGCTGTTTGAGCTTGTCTTTGCCTATTTCGGAGTTTGCTGTTGCCTTTGACTTGGCGTCTAAATTGTCGGCGGAGAGGGCTATTACGCCTTACCCTGTTATGTGGAGGATTAAGCGGCTGTTTGGATTTGGGTCGGAGAGGAAGCTTAGGGATGCTATTAAAATGGTGGATGATCTTGCCATGGAAGTCATACGCCAACGCCGGGAAATTGGATTCTCTCATCGGAATGATCTTCTCTCTAGATTCATGGCTTCCGTTGATGATGACAGATATCTTAGAGACATTGTTGTCAGCTTCCTCCTCGCCGGCCGGGACACGGTGGCGTCGGCTTTGACTAGCTTCTTCTGGCTACTATCTCAAAACCCAGAAGTGGAGGACGAGATTCTCGCCGAGTCGGATCGGGTCATGGGACCCGACCCGGACGCGGTACCCAGTTTCGACAACCTTAAAGACATGCAATATCTTCACGCAGCGGTGTACGAGAATCTGCGCCTCTTTCCACCGGTTCAGTTCGACTCCAAGTTCGCTGAGGAAGACGATATCTTGCCGGACGGCACGTTTGTTCAGAAGGGTACAAGGGTAACTTACCACCCCTACGCCATGGGTCGGATGGACCGGATTTGGGGACCCGATTGTCTCCAGTTTAAACCGGAGAGGTGGCTCAAGAATGGAAGCTTTGCACCTGTAAACCCGTTTAAATTCCCTGTTTTTCAGGCCGGTTTACGGGTTTGTTTGGGGAAGGAGTTAGCGGTGATGGACGTGAAATGTACTGTGGTGGTTTTGATTCGGAAGTTTAAGATCCGGTTGGTTGGAACTGACCGGGTTGCCCGGTTTGCTCCCGGTCTGACGGCTAGCTGGAGAGGTGGGTTGCCGGTTCGAATTGAACAAAGAACCACCAGTTAG 1521 52.73 MASTIMFLFSGASDHLLHSLPSLISILFFSFTAAFTVFSFSLFILRLRPCCNCPICHSYLSSTWLSSFPNLSDWYAHLLSHSPTATITIHVLSNILTANPDNVHHILKTNFHNYPKGKPFSSILGDLLGQGIFNVDGHSWTFQRKMASLELGSLSVRSHAFHILTSQIQTRLLPVLCSNHGMLDLQDIFKRFSFDNICRFSFGLDPGCLSLSLPISEFAVAFDLASKLSAERAITPYPVMWRIKRLFGFGSERKLRDAIKMVDDLAMEVIRQRREIGFSHRNDLLSRFMASVDDDRYLRDIVVSFLLAGRDTVASALTSFFWLLSQNPEVEDEILAESDRVMGPDPDAVPSFDNLKDMQYLHAAVYENLRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGPDCLQFKPERWLKNGSFAPVNPFKFPVFQAGLRVCLGKELAVMDVKCTVVVLIRKFKIRLVGTDRVARFAPGLTASWRGGLPVRIEQRTTS 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3460255 3462618 - CmoCh13G003170.1 Cmo13g00317 394372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00317 506 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 PANTHER CYTOCHROME P450 94C1 26 501 - -
Cmo13g00317 506 SUPERFAMILY Cytochrome P450 60 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 Pfam Cytochrome P450 94 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 Gene3D Cytochrome P450 59 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 PANTHER CYTOCHROME P450 26 501 - -
Cmo13g00317 506 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00317 506 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00465 Cmo-Chr6:2251502 Cmo13g00317 Cmo-Chr13:3460255 0 dispersed
Cmo11g00039 Cmo-Chr11:163670 Cmo13g00317 Cmo-Chr13:3460255 3.65E-133 dispersed
Cmo13g00317 Cmo-Chr13:3460255 Cmo14g00504 Cmo-Chr14:2496929 4.70E-121 dispersed
Cmo13g00317 Cmo-Chr13:3460255 Cmo10g00063 Cmo-Chr10:287927 4.20E-139 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00317 K20624 - csv:101207724 816.609