Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00330 | ATGGCGAATCTCTCGTCTTTCATAAATCCAGAAGGGTCAAGCTTTGATTTTGAAGAGCTCGAAGAAGCCATAGTTTTACAGAGAGTTGAGCTTCAAAACGACGAACTCCAATCTTCACAGCCATCGTCAAACCAGAATCAATCACAGAGAAAAGGAGCAAATTCAACGTCACAGAGGCAGCTTGATGCCAAGACACTGAGACGATTGGCTCAAAACAGAGTAGCTGCAAAAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTCCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCTGAGGGATTGTTTCTAGGTGCTTGTGGTGGCGTTATGGGTGGCAATATCAGCTCCGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACAACGACCTCCGTATGATGTCGGAGTTGCGGGCGGCAGTGGAGGGGCATCTCCCGGACGGCGATCTCCGAGCAATCGTAGACGGTTACATGAGTCACTACGACGAAATATTTGAGTTGAAAAGTGTGGGAGCAAAATCAGATGTGTTTCATTTGATGACGGGAATGTGGATGAGTCCGGCGGAGCGTTGCTTCCTTTGGATCGGAGGATTCCGGCCGTCGAAGCTCATAGAGATGGTAATCCCGCAGTTAGAGACATTAACGGAGCAGCAAGCTGTAGGAATATGTAATTTGCAGAGATGTTCACAAGAAACAGAGGATGCTCTGTATCAGGGGCTTGACCAGTTCCACCATTCTCTCATAATGGCCGTCGCCGGCACTGCCATGATGGAGGGGGTCAACCACATGGCCGTGGCCGCCGGGAAGCTCTCCAACCTTGAAGGCTTCATTCGCCAGGCTGACATGTTGAGACAACAAACGCTTCATCAATTATGTAGAATATTGACGGGTCGACAGGCAGCTCGATGCTTCATGGTAATTGGAGAGTACTATGGAAGACTAAGAGCTCTTAGTTCATTGTGGGTTTCCCGACCAAGAGAGAGCAGGAGATGGTTGAATGATGAAGGTCCATGCCAAACAGCAGCAACAAGAAGAAGAACAGAGGAAGAGATGATTCAGAATCAGATTCAGAGTTCACACAACCATTTCCCGAACTTCTGA | 1140 | 48.33 | MANLSSFINPEGSSFDFEELEEAIVLQRVELQNDELQSSQPSSNQNQSQRKGANSTSQRQLDAKTLRRLAQNRVAAKKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSEGLFLGACGGVMGGNISSGAAIFDMEYARWLDNDLRMMSELRAAVEGHLPDGDLRAIVDGYMSHYDEIFELKSVGAKSDVFHLMTGMWMSPAERCFLWIGGFRPSKLIEMVIPQLETLTEQQAVGICNLQRCSQETEDALYQGLDQFHHSLIMAVAGTAMMEGVNHMAVAAGKLSNLEGFIRQADMLRQQTLHQLCRILTGRQAARCFMVIGEYYGRLRALSSLWVSRPRESRRWLNDEGPCQTAATRRRTEEEMIQNQIQSSHNHFPNF | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4188990 | 4193710 | + | CmoCh13G003300.1 | Cmo13g00330 | 394385 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00330 | 379 | Coils | Coil | 17 | 37 | - | - | |
Cmo13g00330 | 379 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 67 | 82 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo13g00330 | 379 | SMART | brlzneu | 60 | 126 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo13g00330 | 379 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 36 | 348 | - | - | |
Cmo13g00330 | 379 | Coils | Coil | 83 | 110 | - | - | |
Cmo13g00330 | 379 | SUPERFAMILY | Leucine zipper domain | 66 | 106 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo13g00330 | 379 | MobiDBLite | consensus disorder prediction | 34 | 62 | - | - | |
Cmo13g00330 | 379 | Gene3D | - | 63 | 113 | - | - | |
Cmo13g00330 | 379 | ProSiteProfiles | DOG1 domain profile. | 129 | 337 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo13g00330 | 379 | Pfam | bZIP transcription factor | 63 | 104 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo13g00330 | 379 | Pfam | Seed dormancy control | 147 | 221 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo13g00330 | 379 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 62 | 106 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo13g00330 | 379 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 36 | 348 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo13g00330 | Cmo-Chr13:4188990 | Cmo18g00663 | Cmo-Chr18:8459117 | 2.81E-178 | dispersed | |
Cmo13g00330 | Cmo-Chr13:4188990 | Cmo06g00021 | Cmo-Chr6:139954 | 3.77E-115 | transposed | |
Cmo13g00330 | Cmo-Chr13:4188990 | Cmo04g01393 | Cmo-Chr4:7083472 | 1.10E-116 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10811 | PF14144 | DOG1 | 2.70E-30 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00330 | K14431 | - | csv:101204604 | 550.821 |