Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00330 ATGGCGAATCTCTCGTCTTTCATAAATCCAGAAGGGTCAAGCTTTGATTTTGAAGAGCTCGAAGAAGCCATAGTTTTACAGAGAGTTGAGCTTCAAAACGACGAACTCCAATCTTCACAGCCATCGTCAAACCAGAATCAATCACAGAGAAAAGGAGCAAATTCAACGTCACAGAGGCAGCTTGATGCCAAGACACTGAGACGATTGGCTCAAAACAGAGTAGCTGCAAAAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTCCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCTGAGGGATTGTTTCTAGGTGCTTGTGGTGGCGTTATGGGTGGCAATATCAGCTCCGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACAACGACCTCCGTATGATGTCGGAGTTGCGGGCGGCAGTGGAGGGGCATCTCCCGGACGGCGATCTCCGAGCAATCGTAGACGGTTACATGAGTCACTACGACGAAATATTTGAGTTGAAAAGTGTGGGAGCAAAATCAGATGTGTTTCATTTGATGACGGGAATGTGGATGAGTCCGGCGGAGCGTTGCTTCCTTTGGATCGGAGGATTCCGGCCGTCGAAGCTCATAGAGATGGTAATCCCGCAGTTAGAGACATTAACGGAGCAGCAAGCTGTAGGAATATGTAATTTGCAGAGATGTTCACAAGAAACAGAGGATGCTCTGTATCAGGGGCTTGACCAGTTCCACCATTCTCTCATAATGGCCGTCGCCGGCACTGCCATGATGGAGGGGGTCAACCACATGGCCGTGGCCGCCGGGAAGCTCTCCAACCTTGAAGGCTTCATTCGCCAGGCTGACATGTTGAGACAACAAACGCTTCATCAATTATGTAGAATATTGACGGGTCGACAGGCAGCTCGATGCTTCATGGTAATTGGAGAGTACTATGGAAGACTAAGAGCTCTTAGTTCATTGTGGGTTTCCCGACCAAGAGAGAGCAGGAGATGGTTGAATGATGAAGGTCCATGCCAAACAGCAGCAACAAGAAGAAGAACAGAGGAAGAGATGATTCAGAATCAGATTCAGAGTTCACACAACCATTTCCCGAACTTCTGA 1140 48.33 MANLSSFINPEGSSFDFEELEEAIVLQRVELQNDELQSSQPSSNQNQSQRKGANSTSQRQLDAKTLRRLAQNRVAAKKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSEGLFLGACGGVMGGNISSGAAIFDMEYARWLDNDLRMMSELRAAVEGHLPDGDLRAIVDGYMSHYDEIFELKSVGAKSDVFHLMTGMWMSPAERCFLWIGGFRPSKLIEMVIPQLETLTEQQAVGICNLQRCSQETEDALYQGLDQFHHSLIMAVAGTAMMEGVNHMAVAAGKLSNLEGFIRQADMLRQQTLHQLCRILTGRQAARCFMVIGEYYGRLRALSSLWVSRPRESRRWLNDEGPCQTAATRRRTEEEMIQNQIQSSHNHFPNF 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4188990 4193710 + CmoCh13G003300.1 Cmo13g00330 394385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00330 379 Coils Coil 17 37 - -
Cmo13g00330 379 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Cmo13g00330 379 SMART brlzneu 60 126 IPR004827 GO:0003700|GO:0006355
Cmo13g00330 379 PANTHER TRANSCRIPTION FACTOR TGA9 36 348 - -
Cmo13g00330 379 Coils Coil 83 110 - -
Cmo13g00330 379 SUPERFAMILY Leucine zipper domain 66 106 IPR046347 GO:0003700|GO:0006355
Cmo13g00330 379 MobiDBLite consensus disorder prediction 34 62 - -
Cmo13g00330 379 Gene3D - 63 113 - -
Cmo13g00330 379 ProSiteProfiles DOG1 domain profile. 129 337 IPR025422 GO:0006351|GO:0043565
Cmo13g00330 379 Pfam bZIP transcription factor 63 104 IPR004827 GO:0003700|GO:0006355
Cmo13g00330 379 Pfam Seed dormancy control 147 221 IPR025422 GO:0006351|GO:0043565
Cmo13g00330 379 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 106 IPR004827 GO:0003700|GO:0006355
Cmo13g00330 379 PANTHER TRANSCRIPTION FACTOR TGA9 36 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00330 Cmo-Chr13:4188990 Cmo18g00663 Cmo-Chr18:8459117 2.81E-178 dispersed
Cmo13g00330 Cmo-Chr13:4188990 Cmo06g00021 Cmo-Chr6:139954 3.77E-115 transposed
Cmo13g00330 Cmo-Chr13:4188990 Cmo04g01393 Cmo-Chr4:7083472 1.10E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10811 PF14144 DOG1 2.70E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00330 K14431 - csv:101204604 550.821