Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00335 ATGGCCTCAAAATCGGCTTCCAAACCTTCTGCAACTGATCCACTTATCTCTGGAGATGTATTGAACTCCACGCAGAGATCCTTGAATCAGTGTACTTTGAGTGATTCATCAAGCACCAAAGAGATCACATTGACCCAGCGAGATCCTGCGCTTACCGGGACTCGGGGTGTAGCAGAGGACTCTGTGGAACCTGAAAAGAAGACATCAGAATGTGAGAGTGGGAAGGATACGAACAGTGTTGCTAAGAGCAGTGGAAGTGGTAAGATTAGTAACTGTGTGGAGATGGTTGAGAGTGGGAAGAGCAGCGTGTGTCGGGGTAGCACGAGCAGCGATATCAGCGATGAAAGCAGCTGTAGCAGCTTTAGTAGTAGCATCAGTAAGCCTCACAAGTCGAATGACTTGAGATGGGAGGCCATCCAAGCTGTCCGTGCAAGGGATGGGATTTTGGGATTAGGCCATTTTAGACTGTTGAAGAGACTAGGTTGTGGCGATATCGGAAGCGTCTACTTGTCGGAGTTGAGCGGTACTAAATGTTACTTTGCAATGAAGGTCATGGATAAAGGGTCTCTAGCGAGTCGAAAGAAGTTGCTTCGTGCTCAGACCGAACGAGAAATACTGCAATCTCTTGATCATCCATTCCTGCCTACATTGTATACTCATTTCGAAACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGACAGCCCGGGAAGCATTTTCCCGAACAGGCCGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTTGAGTATCTTCACATGCTCGGGATCATATACCGGGACCTTAAGCCCGAGAATGTTCTCGTGAGGGAGGACGGACACATAATGCTTTCAGATTTTGATCTTTCCTTAAGATGTGCTGTTAGTCCAACGTTGGTTAAGGGCTCATGTTCGGAGTCCGAGGCGTTGAGAAAGAATTCAGTTTATTGTGCTCAACCGGCTTGTATCCAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACCATGTGCTTCTCTCCCAGGCTTTTCTCTAGCAAGTCAAAGAAGGATAGGAAACCCAAGATTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCGTTGCAGAGCCTACGGAGGCAAGGTCGATGTCGTTCGTTGGTACACACGAGTACTTGGCGCCCGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACATTTGGGATCTTTCTATATGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCAACGTTGTTCAACGTCGTCGGTCAGCCTTTACGGTTTCCTGAATCACCAGTTGTTAGTTTTGCTGCGAGAGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGAGCAACTGAGATCAAACAACACCCCTTCTTTGAAGGTGTTAACTGGGCATTGATACGATGCGCTTCGCCACCGGAAGTACCAAAGCCTGTCGAGATCGAGCGGATACCCTCACCAACACCTCCAGTCAGTGGAAAAACTGTAATGGCCAGACCTGGCCCTGACTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG 1647 47.66 MASKSASKPSATDPLISGDVLNSTQRSLNQCTLSDSSSTKEITLTQRDPALTGTRGVAEDSVEPEKKTSECESGKDTNSVAKSSGSGKISNCVEMVESGKSSVCRGSTSSDISDESSCSSFSSSISKPHKSNDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEALRKNSVYCAQPACIQPSCIQPSCVVPTMCFSPRLFSSKSKKDRKPKIEIGNQVTPLPELVAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPTPPVSGKTVMARPGPDSKSSDNYLEFDFF 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4328573 4332238 - CmoCh13G003350.1 Cmo13g00335 394390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00335 548 CDD STKc_phototropin_like 153 514 - -
Cmo13g00335 548 SMART serkin_6 154 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00335 548 PANTHER FLIPPASE KINASE 1-RELATED 27 548 - -
Cmo13g00335 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Cmo13g00335 548 MobiDBLite consensus disorder prediction 1 50 - -
Cmo13g00335 548 MobiDBLite consensus disorder prediction 515 540 - -
Cmo13g00335 548 MobiDBLite consensus disorder prediction 59 73 - -
Cmo13g00335 548 Pfam Protein kinase domain 155 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00335 548 Pfam Protein kinase domain 388 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00335 548 Gene3D Transferase(Phosphotransferase) domain 1 385 509 - -
Cmo13g00335 548 ProSiteProfiles Protein kinase domain profile. 154 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00335 548 SUPERFAMILY Protein kinase-like (PK-like) 126 523 IPR011009 -
Cmo13g00335 548 MobiDBLite consensus disorder prediction 1 86 - -
Cmo13g00335 548 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 27 548 - -
Cmo13g00335 548 Gene3D Transferase(Phosphotransferase) domain 1 238 306 - -
Cmo13g00335 548 Gene3D Phosphorylase Kinase; domain 1 152 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00335 Cmo-Chr13:4328573 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo13g00335 Cmo-Chr13:4328573 Cmo03g00624 Cmo-Chr3:5785792 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74762 PF00069 Pkinase 6.40E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00335 K08286 - csv:101213662 946.421