Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00335 | ATGGCCTCAAAATCGGCTTCCAAACCTTCTGCAACTGATCCACTTATCTCTGGAGATGTATTGAACTCCACGCAGAGATCCTTGAATCAGTGTACTTTGAGTGATTCATCAAGCACCAAAGAGATCACATTGACCCAGCGAGATCCTGCGCTTACCGGGACTCGGGGTGTAGCAGAGGACTCTGTGGAACCTGAAAAGAAGACATCAGAATGTGAGAGTGGGAAGGATACGAACAGTGTTGCTAAGAGCAGTGGAAGTGGTAAGATTAGTAACTGTGTGGAGATGGTTGAGAGTGGGAAGAGCAGCGTGTGTCGGGGTAGCACGAGCAGCGATATCAGCGATGAAAGCAGCTGTAGCAGCTTTAGTAGTAGCATCAGTAAGCCTCACAAGTCGAATGACTTGAGATGGGAGGCCATCCAAGCTGTCCGTGCAAGGGATGGGATTTTGGGATTAGGCCATTTTAGACTGTTGAAGAGACTAGGTTGTGGCGATATCGGAAGCGTCTACTTGTCGGAGTTGAGCGGTACTAAATGTTACTTTGCAATGAAGGTCATGGATAAAGGGTCTCTAGCGAGTCGAAAGAAGTTGCTTCGTGCTCAGACCGAACGAGAAATACTGCAATCTCTTGATCATCCATTCCTGCCTACATTGTATACTCATTTCGAAACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGACAGCCCGGGAAGCATTTTCCCGAACAGGCCGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTTGAGTATCTTCACATGCTCGGGATCATATACCGGGACCTTAAGCCCGAGAATGTTCTCGTGAGGGAGGACGGACACATAATGCTTTCAGATTTTGATCTTTCCTTAAGATGTGCTGTTAGTCCAACGTTGGTTAAGGGCTCATGTTCGGAGTCCGAGGCGTTGAGAAAGAATTCAGTTTATTGTGCTCAACCGGCTTGTATCCAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACCATGTGCTTCTCTCCCAGGCTTTTCTCTAGCAAGTCAAAGAAGGATAGGAAACCCAAGATTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCGTTGCAGAGCCTACGGAGGCAAGGTCGATGTCGTTCGTTGGTACACACGAGTACTTGGCGCCCGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACATTTGGGATCTTTCTATATGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCAACGTTGTTCAACGTCGTCGGTCAGCCTTTACGGTTTCCTGAATCACCAGTTGTTAGTTTTGCTGCGAGAGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGAGCAACTGAGATCAAACAACACCCCTTCTTTGAAGGTGTTAACTGGGCATTGATACGATGCGCTTCGCCACCGGAAGTACCAAAGCCTGTCGAGATCGAGCGGATACCCTCACCAACACCTCCAGTCAGTGGAAAAACTGTAATGGCCAGACCTGGCCCTGACTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG | 1647 | 47.66 | MASKSASKPSATDPLISGDVLNSTQRSLNQCTLSDSSSTKEITLTQRDPALTGTRGVAEDSVEPEKKTSECESGKDTNSVAKSSGSGKISNCVEMVESGKSSVCRGSTSSDISDESSCSSFSSSISKPHKSNDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEALRKNSVYCAQPACIQPSCIQPSCVVPTMCFSPRLFSSKSKKDRKPKIEIGNQVTPLPELVAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPTPPVSGKTVMARPGPDSKSSDNYLEFDFF | 548 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4328573 | 4332238 | - | CmoCh13G003350.1 | Cmo13g00335 | 394390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00335 | 548 | CDD | STKc_phototropin_like | 153 | 514 | - | - | |
Cmo13g00335 | 548 | SMART | serkin_6 | 154 | 491 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00335 | 548 | PANTHER | FLIPPASE KINASE 1-RELATED | 27 | 548 | - | - | |
Cmo13g00335 | 548 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 275 | 287 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo13g00335 | 548 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Cmo13g00335 | 548 | MobiDBLite | consensus disorder prediction | 515 | 540 | - | - | |
Cmo13g00335 | 548 | MobiDBLite | consensus disorder prediction | 59 | 73 | - | - | |
Cmo13g00335 | 548 | Pfam | Protein kinase domain | 155 | 307 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00335 | 548 | Pfam | Protein kinase domain | 388 | 491 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00335 | 548 | Gene3D | Transferase(Phosphotransferase) domain 1 | 385 | 509 | - | - | |
Cmo13g00335 | 548 | ProSiteProfiles | Protein kinase domain profile. | 154 | 491 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00335 | 548 | SUPERFAMILY | Protein kinase-like (PK-like) | 126 | 523 | IPR011009 | - | |
Cmo13g00335 | 548 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Cmo13g00335 | 548 | PANTHER | SERINE/THREONINE KINASE FAMILY PROTEIN | 27 | 548 | - | - | |
Cmo13g00335 | 548 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 306 | - | - | |
Cmo13g00335 | 548 | Gene3D | Phosphorylase Kinase; domain 1 | 152 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo13g00335 | Cmo-Chr13:4328573 | Cmo18g00610 | Cmo-Chr18:7402842 | 0 | dispersed | |
Cmo13g00335 | Cmo-Chr13:4328573 | Cmo03g00624 | Cmo-Chr3:5785792 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74762 | PF00069 | Pkinase | 6.40E-37 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00335 | K08286 | - | csv:101213662 | 946.421 |