Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00351 TCTCATGCACATGGTTTAGAAGTTTCGGCTGTAGATCTTCAAAGAGTAGTCGATTCCCATCACAAATTGCTCGGATCCTTCTTGGGGAGTTCTGAGAAGGCAAAAGATGCCATATTTTACTCGTATAAGAACCATATAAATGGGTTTGCAGCCATTCTAGATGAGGAGGAGGCCACCAAGCTTGCAAGTGTATGGCCGGAGTCCAAGAGTTTTGGAGAACATGGCATAGTTGGAGGTGTGCCATCGAAGTGGAAAGGAGGCTGCATGGATAAAACCCCTGATGCAGTGCCTTGTAACAAGAAATTAATCGGAGCAAAATATTTCAATCACGGGGTAATCGCGTACTTGAAATCTGAAAATTTAACGAAAGAACTCTCATTCATCGTCAACTCCACGCGCGACTACGAAGGTCATGGATCCCACACGCTGTCGACGGCCGGCGGTAGCTATGTCTCCGGCGTTAGCGTATTCGGGTCCGGTATCGGAACTGCCAAGGGCGGCTCTCCCAAGGCCCACGTCGCTGCCTATAAGGTCTGCTGGCCGCTCCACGACACTGGCGGCTGCTTTGACGCCGACATTGCCAAGGCATTTGATCATGCCATCCACGATGGCGTCGACGTCCTTTCGGTTTCCCTCGGCAGTCCACCCGCTGAATACTATAATGATATCATTGCCATTGCTTCCTTTCATGCACTGAAGAAAGGAATCCCTGTCGTGTGCTCCGCCGGCAACGATGGCCCGAGCATGGCGACTGTTTCTAATACTGCTCCGTGGATTTTGACGGTCGGAGCTAGCACTTTGGACCGTGAATTTCAGGCCCCCATTGAGCTTAGAAATGGGAAACACTTTAAGGGGTCGAGCCTTTCGGGACCATTATCGGGAAGAAAGCTATACCCATTGATAACGGGAGCTCAGGCAAAAGCGACGACTGCCTCTACTGACGATGCCATGCTCTGCAAGCCAAAAACTTTGGATCATTCTAAAGTGAAAGGGAAGATCTTGGTTTGCTTGAGAGGGGATTCTTCGAGAGTTGACAAAGGAGTGCAAGCCCTCCTCGCTGGTGCTGTCGGAATGATTCTCTGCAACGATAGGCTTAGTGGATTTGAGATCATCGCCGATCCCCATGTTCTTCCAGCTTCCCATATCAGTTACAACGACGGCCAAGCTGTTTCCTCGTACATCAATTCCACGAAAAATCCAATGGGGCATTTGATCCCGCCGTTGTCTAAAGTTAATACCAAACCTTCTCCGACAATGGCGGCTTTCTCATCCAGAGGACCCAACATGGTTTCACCGGAAATTATCAAGCCGGATGTGACCGCGCCAGGAGTGAACATAATTGCGGCATTCTCCGGCTCCGTGAGCCCAACAGGGGAGCCATTCGACAACAGAACAGTTCCATACATAACAATGTCAGGGACCTCGATGTCCTGTCCCCATGTCTCTGGCATTGTCGGCCTCGTTAAAGCTCTCCACCCGAAATGGAGCCCCGCCGCCATCAAATCCGCCATAATGACCTCTGCCAGAATTCGTGACAACACAATGAACATCATGCTCGATGGCGGCTCCCCTATCTTCGCTTCAGCCACCGCCTTCATATTTGGGTCAGGGCACATCCGCCCCACTGGAGCCATCGACCCCGGCCTTGTCTACGACCTTTCCCCCAATGATTACTTGGAATTCCTCTGCGCCAGTGGCTACAAGGAGAAGAACCTTCGAGTATTTGCCGATGGCAATTTCAAATGCCCTGTTTCTAGTTCTATTTTGAACTTTAATTACCCTTCAATTGGAGTTCAGAACTTGACGGGCAATGTCACCCTTACTAGAAGGTTGAAGAATGTTGGCAGGCCGGGGGTTTACAGAGTCAGGGTTCAGCAGCCGGAAGGAGTTAAGGTTTCGGTGAAGCCAAGCGTTTTAAAGTTTGAGAAGATTGGAGAGGAGAAGAGGTTTGAATTGACGATGACCGGAGTTGTGGCGAATGGTCAAATTGGTTATGGCACGCTGATTTGGACCGACGGCAAGCACTTGGTTAGGAGTCCAATTGTGGTTTCTTCGGGCTTTTTCTGA 2067 50.17 SHAHGLEVSAVDLQRVVDSHHKLLGSFLGSSEKAKDAIFYSYKNHINGFAAILDEEEATKLASVWPESKSFGEHGIVGGVPSKWKGGCMDKTPDAVPCNKKLIGAKYFNHGVIAYLKSENLTKELSFIVNSTRDYEGHGSHTLSTAGGSYVSGVSVFGSGIGTAKGGSPKAHVAAYKVCWPLHDTGGCFDADIAKAFDHAIHDGVDVLSVSLGSPPAEYYNDIIAIASFHALKKGIPVVCSAGNDGPSMATVSNTAPWILTVGASTLDREFQAPIELRNGKHFKGSSLSGPLSGRKLYPLITGAQAKATTASTDDAMLCKPKTLDHSKVKGKILVCLRGDSSRVDKGVQALLAGAVGMILCNDRLSGFEIIADPHVLPASHISYNDGQAVSSYINSTKNPMGHLIPPLSKVNTKPSPTMAAFSSRGPNMVSPEIIKPDVTAPGVNIIAAFSGSVSPTGEPFDNRTVPYITMSGTSMSCPHVSGIVGLVKALHPKWSPAAIKSAIMTSARIRDNTMNIMLDGGSPIFASATAFIFGSGHIRPTGAIDPGLVYDLSPNDYLEFLCASGYKEKNLRVFADGNFKCPVSSSILNFNYPSIGVQNLTGNVTLTRRLKNVGRPGVYRVRVQQPEGVKVSVKPSVLKFEKIGEEKRFELTMTGVVANGQIGYGTLIWTDGKHLVRSPIVVSSGFF 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4481971 4485413 + CmoCh13G003510.1 Cmo13g00351 394406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00351 688 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 63 683 IPR045051 -
Cmo13g00351 688 SUPERFAMILY PA domain 326 398 IPR046450 -
Cmo13g00351 688 ProSitePatterns Serine proteases, subtilase family, serine active site. 473 483 IPR023828 -
Cmo13g00351 688 Gene3D - 562 686 - -
Cmo13g00351 688 CDD Peptidases_S8_3 64 508 IPR034197 -
Cmo13g00351 688 Pfam Fibronectin type-III domain 590 683 IPR041469 -
Cmo13g00351 688 Gene3D Peptidase S8/S53 domain 64 558 IPR036852 GO:0004252|GO:0006508
Cmo13g00351 688 Pfam Peptidase inhibitor I9 14 62 IPR010259 -
Cmo13g00351 688 SUPERFAMILY Subtilisin-like 90 549 IPR036852 GO:0004252|GO:0006508
Cmo13g00351 688 CDD PA_subtilisin_like 275 402 - -
Cmo13g00351 688 Pfam Subtilase family 130 509 IPR000209 GO:0006508|GO:0008236
Cmo13g00351 688 Gene3D - 268 412 - -
Cmo13g00351 688 ProSiteProfiles Serine proteases, subtilase domain profile. 1 545 - -
Cmo13g00351 688 Pfam PA domain 315 389 IPR003137 -
Cmo13g00351 688 PRINTS Subtilisin serine protease family (S8) signature 472 488 IPR015500 -
Cmo13g00351 688 PRINTS Subtilisin serine protease family (S8) signature 134 147 IPR015500 -
Cmo13g00351 688 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 4 61 IPR045051 -
Cmo13g00351 688 PANTHER SUBTILISIN-LIKE PROTEASE 63 683 - -
Cmo13g00351 688 PANTHER SUBTILISIN-LIKE PROTEASE 4 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00351 Cmo-Chr13:4481971 Cmo13g00358 Cmo-Chr13:4600597 0 dispersed
Cmo13g00356 Cmo-Chr13:4583592 Cmo13g00351 Cmo-Chr13:4481971 1.06E-41 dispersed
Cmo13g00357 Cmo-Chr13:4585035 Cmo13g00351 Cmo-Chr13:4481971 8.31E-30 dispersed
Cmo13g00351 Cmo-Chr13:4481971 Cmo13g00352 Cmo-Chr13:4498574 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00351 - - cmos:111434033 1113.6