Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00352 ATGAACATTCCTACTAATTTCATCTTTATGTTGTTCGGGTTCTTTTGGTTAATATCACCGGTCATTGCTGTCAAAAAGTCCTATATTGTGTTATTAGGATCTCATTCACATGGGTTAGAGGTATCAGCAGTAGATCTTCAAAGAGCGGTCGATTCCCATCACAAATTGCTCGGATCCTTCTTGGGGAGTTCTGGAAAGGCAAAAGATGCAATTTTTTACTCGTATAAGAACCACATCAATGGGTTTGCAGCCATTCTAGAGGAGGAGGAGGCCACCAAACTTGCAAAGCACCCAGAAGTAGCAGCAGTGCTGCCAAACAAAGCTAAAGAGTTACACACAACTCATTCATGGGAGTCCATGCATTTGGAGAAGAATGATGTTATTCCTTCTTCTTCTCCTTGGAGGAAGGCTAGATTTGGAGAAGATGTTATTATCGCCAATCTTGACTCAGGTGTATGGCCGGAGTCCAAGAGTTTTGGAGAACAAGGCATAGTTGGAGGCGTGCCATCGAGGTGGAAAGGAGGCTGCATGGATAAAACCCCTGATGGAGTGCCTTGCAACCGGAAATTAATCGGAGCAAAGTATTTCAACCAAGGGGCACTCGCGTACTTGAAATCCCAAAATTTAATGGAGGAACTCCCATTGATCGTCAACTCCACGCGCGACTACAAAGGTCATGGATCCCACACGCTGTCGACGGCTGGCGGCAGTTATGTCTCCAACGTTAGCGTATTTGGGTCCGGTATCGGAACTGCCAAGGGCGGCTCTCCCAAGGCCCGCGTTGCTGCCTATAAGGTCTGCTGGCCGCTTCCTAACATTGGTGGCTGCTTTGACGCCGACGTTGCCGAGGCATTTGATCATGCCATCCACGACGGCGTCGATGTCCTTTCGCTTTCCATCGGCAGTCCACCAGCCGAATACTATGATGATATCATTGCCATTGGTTCCTTTCATGCACTAAAGAAAGGAATCCCCGTTGTGTGCTCCGCCGGAAACTCCGGCCCGAGCATGGCGACTGCTTCTAATATTGCTCCGTGGATTTTGACAGTCGGGGCTAGCACTTTGGACCGTGAATTTCAGGCGCCCATTGAACTTGGAAACGGACAACGCTTCACGGGATCGAGCCTTTCGAATCCATTAGCGGGAAGAAAGCTATACCCATTGATAACGGGAGCTCAGGCGAAAGCGACGACTGCCTTTGCCCAGGACTCCATTCTCTGCAAACCGGAAACGTTGGATCATTCTAAAGTGAAAGGGAAGATCTTGGTTTGCTTGAGAGGGGGTTCTTCGAGAATTGACAAAGGAATGCAAGCCCTCCTCGCCGGTGCTGTCGGAATGATTCTCTGCAATGATAGGCTTAGTGGATTTGAAATCATGGCCGATCTCCATGTTCTTCCAACTTCCCATATCAATTACAATGACGGCCAAGCTGTTTTCTCGTACATCTATTCCACGAAAAATCCGATGGGATATTTGATCCCGCCGTCGTCTAAAGTTAATACCAAACCTTCTCCGACAATGGCGGCTTTCTCATCCAGAGGACCCAACATCGTTTCACCGGAAATTATCAAGCCGGACGTGACAGCGCCGGGAGTGAACATAATCGCGGCGTTCTCCGGCGCCGTGAGCCCAACAGGGGAGCCATTCGACAACAGAGCAGTTCCATACATAACAATGTCGGGGACCTCCATGTCCTGTCCCCATGTCTCTGGCATTGTCGGCCTCCTCAAAGCTCTCCACCCCGAATGGAGCCCTGCTGCCATCAAATCTGCCATAATGACCTCCGCTAGAGTTAGCGACAACACAATGAACCTCATGCTCGACGGCGGCTCCCCTATCTTTGCTCCAGCCACCCCGTTCGTATACGGGTCAGGGCACATCCGCCCCACTGGCGCCATCGACCCCGGCCTTGTCTACGACCTTTCCCCTAACGATTACTTGGAATTCCTCTGCGCCAGCGGCTACACGGAGAAGAACCTTCGAGTATTCACCGATGGCAATTTCAAATGCCCTGTTTCTGGTTCTATTTTGAACTTTAATTACCCTTCTATTGGGGTTCAGAACTTAACTGGGAGTGTCACCGTTTCTAGAAGGCTGAAGAATGTTGGCATGCCGGGGGTTTACAGAGTTAGAGTCCAACAGCCAGAAGGAGTTAAGGTTTCAGTGAAGCCAAACGTTTTGAAGTTTGAGAAGATTGGAGAGGAGAAGGGGTTTGAATTGACGATGACAGGAGCTGTGGCGGAGGGTCAAATTGGTTATGGTGTATGGCCGGAGTCCAAGAGTTTTGGAGAACAAGGCATAGTTGGAGGCGTGCCATCGAGGTGGAAAGGAGGCTGCATGGATAAAACCCCTGATGGAGTGCCTTGCAACCGGAAATTAATCGGAGCAAAGTATTTCAACCAAGGGGCACTCGCGTACTTGAAATCCCAAAATTTAATGGAGGAACTCCCATTGATCGTCAACTCCACGCGCGACTACAAAGGTCATGGATCCCACACGCTGTCGACGGCTGGCGGCAGTTATGTCTCCAACGTTAGCGTATTTGGGTCCGGTATCGGAACTGCCAAGGGCGGCTCTCCCAAGGCCCGCGTTGCTGCCTATAAGGTCTGCTGGCCGCTTCCTAACATTGGTGGCTGCTTTGACGCCGACGTTGCCGAGGCATTTGATCATGCCATCCACGACGGCGTCGATGTCCTTTCGCTTTCCATCGGCAGTCCACCAGCCGAATACTATGATGATATCATTGCCATTGGTTCCTTTCATGCACTAAAGAAAGGAATCCCCGTTGTGTGCTCCGCCGGAAACTCCGGCCCGAGCATGGCGACTGCTTCTAATATTGCTCCGTGGATTTTGACAGTCGGGGCTAGCACTTTGGACCGTGAATTCCAGGCGCCCATTGAACTTGGAAACGGACAACGCTTCACGGGATCGAGCCTTTCGAATCCATTAGCGGGAAGAAAGCTATACCCATTGATAACGGGAGCTCAGGCGAAAGCGACGACTGCCTTTGCCCAGGACTCCATTCTCTGCAAACCGGAAACGTTGGATCATTCTAAAGTGAAAGGGAAGATCTTGGTTTGCTTGAGAGGGGGTTCTTCGAGAATTGACAAAGGAATGCAAGCCCTCCTCGCCGGTGCTGTCGGAATGATTCTCTGCAATGATAGGCTTAGTGGATTTGAAATCATGGCCGATCTCCATGTTCTTCCAACTTCCCATATCAATTACAATGACGGCCAAGCTGTTTTCTCGTACATCTATTCCACGAAAAATCCGATGGGATATTTGATCCCGCCGTCGTCTAAAGTTAATACCAAACCTTCTCCGACAATGGCGGCTTTCTCATCCAGAGGACCCAACATCGTTTCACCGGAAATTATCAAGCCGGACGTGACAGCGCCGGGAGTGAACATAATCGCGGCGTTCTCCGGCGCCGTGAGCCCAACAGGGGAGCCATTCGACAACAGAGCAGTTCCATACATAACAATGTCGGGGACCTCCATGTCCTGTCCCCATGTCTCTGGCATTGTCGGCCTCCTCAAAGCTCTCCACCCCGAATGGAGCCCTGCTGCCATCAAATCTGCCATAATGACCTCCGCTAGAGTTAGCGACAACACAATGAACCTCATGCTCGACGGCGGCTCCCCTATCTTTGCTCCAGCCACCCCGTTCGTATACGGGTCAGGGCACATCCGCCCCACTGGCGCCATCGACCCCGGCCTTGTCTACGACCTTTCCCCTAACGATTACTTGGAATTCCTCTGCGCCAGCGGCTACACGGAGAAGAACCTTCGAGTATTCACCGATGGCAATTTCAAATGCCCTGTTTCTGGTTCTATTTTGAACTTTAATTACCCTTCTATTGGGGTTCAGAACTTAACTGGGAGTGTCACCGTTTCTAGAAGGCTGAAGAATGTTGGCATGCCGGGGGTTTACAGAGTTAGAGTCCAACAGCCAGAAGGAGTTAAGGTTTCAGTGAAGCCAAACGTTTTGAAGTTTGAGAAGATTGGAGAGGAGAAGGGGTTTGAATTGACGATGACAGGAGCTGTGGCGGAGGGTCAAATTGGTTATGGTACGTTGATTTGGACGGACGACAAACACTTTGTTAGGAGCCCAATTGTTGTTTCTTCTAGCTTTTTCTGA 4140 50.39 MNIPTNFIFMLFGFFWLISPVIAVKKSYIVLLGSHSHGLEVSAVDLQRAVDSHHKLLGSFLGSSGKAKDAIFYSYKNHINGFAAILEEEEATKLAKHPEVAAVLPNKAKELHTTHSWESMHLEKNDVIPSSSPWRKARFGEDVIIANLDSGVWPESKSFGEQGIVGGVPSRWKGGCMDKTPDGVPCNRKLIGAKYFNQGALAYLKSQNLMEELPLIVNSTRDYKGHGSHTLSTAGGSYVSNVSVFGSGIGTAKGGSPKARVAAYKVCWPLPNIGGCFDADVAEAFDHAIHDGVDVLSLSIGSPPAEYYDDIIAIGSFHALKKGIPVVCSAGNSGPSMATASNIAPWILTVGASTLDREFQAPIELGNGQRFTGSSLSNPLAGRKLYPLITGAQAKATTAFAQDSILCKPETLDHSKVKGKILVCLRGGSSRIDKGMQALLAGAVGMILCNDRLSGFEIMADLHVLPTSHINYNDGQAVFSYIYSTKNPMGYLIPPSSKVNTKPSPTMAAFSSRGPNIVSPEIIKPDVTAPGVNIIAAFSGAVSPTGEPFDNRAVPYITMSGTSMSCPHVSGIVGLLKALHPEWSPAAIKSAIMTSARVSDNTMNLMLDGGSPIFAPATPFVYGSGHIRPTGAIDPGLVYDLSPNDYLEFLCASGYTEKNLRVFTDGNFKCPVSGSILNFNYPSIGVQNLTGSVTVSRRLKNVGMPGVYRVRVQQPEGVKVSVKPNVLKFEKIGEEKGFELTMTGAVAEGQIGYGVWPESKSFGEQGIVGGVPSRWKGGCMDKTPDGVPCNRKLIGAKYFNQGALAYLKSQNLMEELPLIVNSTRDYKGHGSHTLSTAGGSYVSNVSVFGSGIGTAKGGSPKARVAAYKVCWPLPNIGGCFDADVAEAFDHAIHDGVDVLSLSIGSPPAEYYDDIIAIGSFHALKKGIPVVCSAGNSGPSMATASNIAPWILTVGASTLDREFQAPIELGNGQRFTGSSLSNPLAGRKLYPLITGAQAKATTAFAQDSILCKPETLDHSKVKGKILVCLRGGSSRIDKGMQALLAGAVGMILCNDRLSGFEIMADLHVLPTSHINYNDGQAVFSYIYSTKNPMGYLIPPSSKVNTKPSPTMAAFSSRGPNIVSPEIIKPDVTAPGVNIIAAFSGAVSPTGEPFDNRAVPYITMSGTSMSCPHVSGIVGLLKALHPEWSPAAIKSAIMTSARVSDNTMNLMLDGGSPIFAPATPFVYGSGHIRPTGAIDPGLVYDLSPNDYLEFLCASGYTEKNLRVFTDGNFKCPVSGSILNFNYPSIGVQNLTGSVTVSRRLKNVGMPGVYRVRVQQPEGVKVSVKPNVLKFEKIGEEKGFELTMTGAVAEGQIGYGTLIWTDDKHFVRSPIVVSSSFF 1379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4498574 4505375 + CmoCh13G003520.1 Cmo13g00352 394407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00352 1379 Pfam Peptidase inhibitor I9 27 111 IPR010259 -
Cmo13g00352 1379 CDD PA_subtilisin_like 363 492 - -
Cmo13g00352 1379 CDD Peptidases_S8_3 109 596 IPR034197 -
Cmo13g00352 1379 SUPERFAMILY Subtilisin-like 127 637 IPR036852 GO:0004252|GO:0006508
Cmo13g00352 1379 Pfam Subtilase family 822 1207 IPR000209 GO:0006508|GO:0008236
Cmo13g00352 1379 PRINTS Subtilisin serine protease family (S8) signature 560 576 IPR015500 -
Cmo13g00352 1379 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Cmo13g00352 1379 PRINTS Subtilisin serine protease family (S8) signature 222 235 IPR015500 -
Cmo13g00352 1379 PANTHER SUBTILISIN-LIKE PROTEASE 749 1374 - -
Cmo13g00352 1379 ProSitePatterns Serine proteases, subtilase family, serine active site. 561 571 IPR023828 -
Cmo13g00352 1379 CDD PA_subtilisin_like 966 1095 - -
Cmo13g00352 1379 SUPERFAMILY PA domain 1017 1085 IPR046450 -
Cmo13g00352 1379 SUPERFAMILY Subtilisin-like 749 1240 IPR036852 GO:0004252|GO:0006508
Cmo13g00352 1379 Gene3D - 1253 1377 - -
Cmo13g00352 1379 SUPERFAMILY PA domain 414 482 IPR046450 -
Cmo13g00352 1379 Gene3D Peptidase S8/S53 domain 749 1249 IPR036852 GO:0004252|GO:0006508
Cmo13g00352 1379 PANTHER SUBTILISIN-LIKE PROTEASE 18 745 - -
Cmo13g00352 1379 Pfam Fibronectin type-III domain 678 746 IPR041469 -
Cmo13g00352 1379 Pfam Fibronectin type-III domain 1281 1374 IPR041469 -
Cmo13g00352 1379 Pfam PA domain 407 477 IPR003137 -
Cmo13g00352 1379 Pfam PA domain 1010 1080 IPR003137 -
Cmo13g00352 1379 Gene3D - 356 500 - -
Cmo13g00352 1379 Gene3D - 959 1103 - -
Cmo13g00352 1379 Gene3D Peptidase S8/S53 domain 142 646 IPR036852 GO:0004252|GO:0006508
Cmo13g00352 1379 ProSiteProfiles Serine proteases, subtilase domain profile. 116 633 - -
Cmo13g00352 1379 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 18 745 IPR045051 -
Cmo13g00352 1379 Pfam Subtilase family 141 604 IPR000209 GO:0006508|GO:0008236
Cmo13g00352 1379 CDD Peptidases_S8_3 754 1199 IPR034197 -
Cmo13g00352 1379 ProSiteProfiles Serine proteases, subtilase domain profile. 774 1236 - -
Cmo13g00352 1379 ProSitePatterns Serine proteases, subtilase family, serine active site. 1164 1174 IPR023828 -
Cmo13g00352 1379 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 749 1374 IPR045051 -
Cmo13g00352 1379 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 112 IPR037045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00352 Cmo-Chr13:4498574 Cmo13g00358 Cmo-Chr13:4600597 0 dispersed
Cmo13g00355 Cmo-Chr13:4541733 Cmo13g00352 Cmo-Chr13:4498574 1.77E-12 dispersed
Cmo13g00352 Cmo-Chr13:4498574 Cmo13g00354 Cmo-Chr13:4540870 1.26E-08 proximal
Cmo13g00351 Cmo-Chr13:4481971 Cmo13g00352 Cmo-Chr13:4498574 0 tandem
Cmo13g00352 Cmo-Chr13:4498574 Cmo13g00353 Cmo-Chr13:4529577 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00352 - - cmos:111434037 1317.37