Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00420 ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTTTGCGGTATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTGTCGTCGGGCTCGAGAGGGTTCTCGCTAAGTTCAAAAGTCTTTCGGAGATGGAGCAATGCAATAAGATGGTGAACCAAGAGACCTTCCTCCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGGGAGAATCGTGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCGCCACGAGATCTCAATATCATTGATTTGTATGATCTCGTTTGGTTTGTTGATGAGACAATGACTGATGTTTGTAAGAGGATTGAGTTGCTTACGACAACTATGACCGAACCGCCGGTTGGGTCGGCGGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGGAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGCCCCTTCAATTCCTAACCTGACCTCTGGCCCTCCGCCGTGGGGCTCTAGAGGGTTGTCTCTAAGTTCGAAAGCCTGCCGGAGATGGAGCAATGCAATAAGATGGTCAACCAAGAGGCATTCCTTCACGACCGCATCTCCTAGGGCTGCCGAGCAACTCGAGAAGTAG 783 48.66 MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDDNHAPSIPNLTSGPPPWGSRGLSLSSKACRRWSNAIRWSTKRHSFTTASPRAAEQLEK 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5216891 5219640 - CmoCh13G004200.1 Cmo13g00420 394475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00420 260 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 170 - -
Cmo13g00420 260 MobiDBLite consensus disorder prediction 204 224 - -
Cmo13g00420 260 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cmo13g00420 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 - -
Cmo13g00420 260 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cmo13g00420 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cmo13g00420 260 Coils Coil 87 114 - -
Cmo13g00420 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00420 - - - csv:101219796 301.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01262 Cmo-Chr10:12962769 Cmo13g00420 Cmo-Chr13:5216891 7.94E-71 dispersed
Cmo13g00420 Cmo-Chr13:5216891 Cmo14g00831 Cmo-Chr14:4297767 8.04E-11 dispersed
Cmo13g00420 Cmo-Chr13:5216891 Cmo18g01160 Cmo-Chr18:11794852 7.22E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10816 PF00319 SRF-TF 1.70E-17 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00420 Cmo_Chr13 FPKM 8.686828 8.95811 11.445391 10.93892 15.912058 18.161812 15.506455 13.484852 12.876513 11.608671