Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00420 ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTTTGCGGTATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTGTCGTCGGGCTCGAGAGGGTTCTCGCTAAGTTCAAAAGTCTTTCGGAGATGGAGCAATGCAATAAGATGGTGAACCAAGAGACCTTCCTCCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGGGAGAATCGTGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCGCCACGAGATCTCAATATCATTGATTTGTATGATCTCGTTTGGTTTGTTGATGAGACAATGACTGATGTTTGTAAGAGGATTGAGTTGCTTACGACAACTATGACCGAACCGCCGGTTGGGTCGGCGGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGGAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGCCCCTTCAATTCCTAACCTGACCTCTGGCCCTCCGCCGTGGGGCTCTAGAGGGTTGTCTCTAAGTTCGAAAGCCTGCCGGAGATGGAGCAATGCAATAAGATGGTCAACCAAGAGGCATTCCTTCACGACCGCATCTCCTAGGGCTGCCGAGCAACTCGAGAAGTAG 783 48.66 MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDDNHAPSIPNLTSGPPPWGSRGLSLSSKACRRWSNAIRWSTKRHSFTTASPRAAEQLEK 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5216891 5219640 - CmoCh13G004200.1 Cmo13g00420 394475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00420 260 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 170 - -
Cmo13g00420 260 MobiDBLite consensus disorder prediction 204 224 - -
Cmo13g00420 260 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cmo13g00420 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 - -
Cmo13g00420 260 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cmo13g00420 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cmo13g00420 260 Coils Coil 87 114 - -
Cmo13g00420 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo13g00420 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01262 Cmo-Chr10:12962769 Cmo13g00420 Cmo-Chr13:5216891 7.94E-71 dispersed
Cmo13g00420 Cmo-Chr13:5216891 Cmo14g00831 Cmo-Chr14:4297767 8.04E-11 dispersed
Cmo13g00420 Cmo-Chr13:5216891 Cmo18g01160 Cmo-Chr18:11794852 7.22E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10816 PF00319 SRF-TF 1.70E-17 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00420 - - csv:101219796 301.597