Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00445 ATGGCTCTGTGGGTCTTCATCTTGATGATTTTCTTGTTGATCTTTGGTTTTATTCCTGTTTCTCCTGCTCTTACTCATGATTCTGATGTTCAAGCTTTGCAAGTTATATACACTTCATTGAACAGTCCTTCTCAGCTGACTGGTTGGATTGCTAGTGGTGGGGATCCATGTGCAGAGTCATGGAAGGGGGTGGCTTGTGAAGGGTCTGCTGTTGTGTCAATTGAGATTTCTGGTTTAGAGCTGAATGGAACGATGGGTTATGCGCTTTCGAGTCTTTTGTCATTGAAAGAACTTGATATAAGCGACAACCTTATTCATGACTCGATTCCTTACCAATTGCCGCCGAATCTCACGAGACTAAATATGGCGAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAGTTATTTGAATATGAGCCACAATTTACTATCTCAGGCGATAGGAGACGTTTTCACCAATCTTTCTACCCTGGGGACGTTGGACCTTTCTTTCAACAACTTTACTGGAGATCTTCCTAAATCCTTGAGCTCTTTATCCAATGTTTCTTCCCTCTTTCTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTCATCAGTTTGCCTCTGACCACTCTAAATGTAGCAAACAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATCGAAAATTTCATATACGATGGAAATTCATTTGATGATAGTCCTGCACCTCCTCCCCCGCCTTTTACTCCACCGCCTCCTGGTAGATCTCGTAACAGCTCCAGACATCCCGGGTCTGGCGGTGGCACCCATACTGCCTCAAGTTCTGATACGAGCTCGTCCCACTCGAACAAAGGCTTGTCAGTTTTGGTTATGGTGGGGATAATTTTGGGTGCTATAATTATTGCCCTCATTGTGTTAGTTGCTTTCGCTGTCTGCATCATGAAGAGAAAACGCAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCATTTGGCAACAATGTGAATGCTGAGGTGGAAGAGCGTCGGGGAAAAAGCGTTGTTGCTGTTGGAGATATTAAGCCTCTTCGTACCGAGAAAATAAATCCCGAGAGGTTACAGGCGACGAATGGATCAGTGAAAAGAATGAAGTCCCCTATCACTGCTACTTCTTACACCGTGGCTGCTCTTCAAAGTGCAACGAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTCGGTCGTGTTTACAAATCGGAGTTTCCAAATGGGAAGATAATGGCGATAAAGAAAATCGATAACGCAGCACTATCACTACAAGAGGAAGACAATTTTCTTGAAGCGGTTTCAAACATGTCGCGATTGAGGCATACGAACATTGTGACACTAAATGGTTATTGTGCGGAATATGGTCAGCGTCTTCTAGTTTACGAGTTCATTGGAAATGGAAGTTTACACGACATTCTCCATTTTGCTGATGAAAGTAGCAAGACACTGACTTGGAATGCACGTGTACGCGTAGCGCTTGGAACCGCCCGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCCGTTGTACATAGAAACTTGAAAAGTGCAAACATTTTACTTGATGAAGAGCTCAATCCCCATTTGTCAGATTGTGGTTTAGCTGCTTTAACACCGAACACAGGGCGACAGATATCTACTCAGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCGGGTTTGTACACAGTCAAAAGTGACGTTTATAGCTTTGGGGTCGTGATGTTGGAGCTCTTGAGTGGCCGAAAGCCGCTTGACAGTTCGAGGGCGAGATCGGAGCAATCACTTGTGAGATGGGCTACTCCCCAACTTCACGATATCGACGCCTTGGCAAAAATGGTAGACCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTATCGCGCTTCGCCGACATTATTGCTCTTTGTGTCCAGCCCGAGCCCGAATTCCGACCTCCAATGTCTGAAGTAGTACAAGCACTAGTACGGTTAGTGCAAAGAGCCAGTGTGGTAAAAAGGCATTCGAGTGACGAGTCGGGTTTCACGTACAAAACGCCCGAGCACGATGTAGTTGATTTGCCATTTTGA 2136 44.62 MALWVFILMIFLLIFGFIPVSPALTHDSDVQALQVIYTSLNSPSQLTGWIASGGDPCAESWKGVACEGSAVVSIEISGLELNGTMGYALSSLLSLKELDISDNLIHDSIPYQLPPNLTRLNMAKNSLSGNLPYSFSTMASLSYLNMSHNLLSQAIGDVFTNLSTLGTLDLSFNNFTGDLPKSLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFDDSPAPPPPPFTPPPPGRSRNSSRHPGSGGGTHTASSSDTSSSHSNKGLSVLVMVGIILGAIIIALIVLVAFAVCIMKRKRKNIGLRASSGRLSFGNNVNAEVEERRGKSVVAVGDIKPLRTEKINPERLQATNGSVKRMKSPITATSYTVAALQSATNSFSQECIVGEGSLGRVYKSEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEYGQRLLVYEFIGNGSLHDILHFADESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKSANILLDEELNPHLSDCGLAALTPNTGRQISTQMVGSFGYSAPEFALSGLYTVKSDVYSFGVVMLELLSGRKPLDSSRARSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPEHDVVDLPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5527773 5534061 - CmoCh13G004450.1 Cmo13g00445 394500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00445 711 MobiDBLite consensus disorder prediction 241 286 - -
Cmo13g00445 711 Gene3D Phosphorylase Kinase; domain 1 364 480 - -
Cmo13g00445 711 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cmo13g00445 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00445 711 SUPERFAMILY L domain-like 25 232 - -
Cmo13g00445 711 Pfam Protein kinase domain 405 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00445 711 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 23 706 - -
Cmo13g00445 711 MobiDBLite consensus disorder prediction 244 262 - -
Cmo13g00445 711 CDD STKc_IRAK 409 680 - -
Cmo13g00445 711 SUPERFAMILY Protein kinase-like (PK-like) 381 677 IPR011009 -
Cmo13g00445 711 PANTHER OS01G0253100 PROTEIN 23 706 IPR045271 GO:0004714|GO:0006468
Cmo13g00445 711 Gene3D Ribonuclease Inhibitor 24 254 IPR032675 -
Cmo13g00445 711 Gene3D Transferase(Phosphotransferase) domain 1 481 705 - -
Cmo13g00445 711 MobiDBLite consensus disorder prediction 263 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00445 Cmo-Chr13:5527773 Cmo01g00024 Cmo-Chr1:83641 0 dispersed
Cmo13g00445 Cmo-Chr13:5527773 Cmo18g00544 Cmo-Chr18:4215426 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74764 PF00069 Pkinase 1.60E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00445 - - csv:101216091 1151.35