Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00465 ATGGCTGCAAAAGATGCAGAGAAAGTTTTGGACGTGCAGTCGGTCGTTGAAGCAGTAGTTGCAGACGAAGACGCCGATGTTCCTCGCTACGAAGTAGAAAGCCTTTGCATGCGCTGTCACGAAAATGGGACAACAAGATTTTTGTTAACTTTAATTCCGAACTTCAGAAAGATCTTATTGTCGGCCTTTGAGTGTCCACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATCCAGCCGCGAGGCTGTTGCTATTCTTTGGAGGTTCATGCTGGCGACCAGAAGACGCTCAATCGACAAGTGGTGAAATCTGAATCTGCCATTATTAAGATCCCTGAATTGGATTTCGAGATTCCAGCCGAGGCTCAACGTGGAACTCTATCAACCGTGGAAGGTATATTGGTACGAGCCATAGATGGATTGGAATCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACAAGTTTCTCCTGAAACTGAAAGCATGTGCCATAGGAGATTCATCTTTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCATCCAAAGATCCATCATTAAGTATCAAGTTTTATGAGCGGAGTCCAGAACAACAAGCATCATTGGGTTATTACGTTGAATCATCCCAATCTGAAGAAGCTGAGGGTGGAGTATCAACAAGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAGCGGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTCCCATCTACATGTGGAGCTTGTGCAGTTGGGTGTGAGACTCGAATGTTTGTAACTAAAATTCCCTACTTCCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGTGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTAAAGAATGTTAAAGATCTCAGTCGAGATTTGATAAAGTCAGATACTGCAAGTGTGAAAGTCCCAGATCTTGACTTGGAGCTGACTAGTGGCACTCTTGGGGGAATTGTTACAACTGTTGAAGGTTTAATCACAAAGATAAGTGAAAGTCTAGAGAGAGTGCATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAAAAGAAACAAGTGGCAGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAACAGCCTTGGACTCTAATCCTTGATGATGCATTAGCAAACTCGTTTATTGCACCAGTGACTGATGATATCAAAGATGACCATCAGTTAACATATGAGGAATACGAACGGTCCTGGGAACAGAACGAGGAACTCGGTTTGAACGACATGGACACCTCATCTGCTGATGCTGCTTACACGTAA 1473 44.06 MAAKDAEKVLDVQSVVEAVVADEDADVPRYEVESLCMRCHENGTTRFLLTLIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEVHAGDQKTLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAIDGLESLQEERRKVDPQTAEAIDKFLLKLKACAIGDSSFSFILDDPAGNSFIENPFAPSKDPSLSIKFYERSPEQQASLGYYVESSQSEEAEGGVSTSGVDASNQVRGEAHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAVGCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKNVKDLSRDLIKSDTASVKVPDLDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENKRNKWQDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDIKDDHQLTYEEYERSWEQNEELGLNDMDTSSADAAYT 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5690933 5708940 - CmoCh13G004650.1 Cmo13g00465 394520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00465 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 36 218 IPR004457 GO:0008270
Cmo13g00465 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 290 481 IPR004457 GO:0008270
Cmo13g00465 490 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 489 - -
Cmo13g00465 490 PANTHER ZINC FINGER PROTEIN ZPR1 3 489 IPR040141 -
Cmo13g00465 490 Gene3D ZPR1, zinc finger domain 27 79 IPR042452 -
Cmo13g00465 490 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
Cmo13g00465 490 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
Cmo13g00465 490 Gene3D ZPR1, A/B domain 335 477 IPR042451 -
Cmo13g00465 490 SMART zpr1 34 194 IPR004457 GO:0008270
Cmo13g00465 490 SMART zpr1 289 449 IPR004457 GO:0008270
Cmo13g00465 490 Pfam ZPR1 zinc-finger domain 34 193 IPR004457 GO:0008270
Cmo13g00465 490 Pfam ZPR1 zinc-finger domain 289 447 IPR004457 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00465 K06874 - csv:101208000 889.412