Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00481 | ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGTGTATTCGCGCCATACTTCCCCGCCGACCAGCCCCATAAGTTCGCCAATGTCCACAAGGTGTTCGGCGCCAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGGGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGGGTGCGTGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA | 522 | 55.56 | MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5814170 | 5816280 | - | CmoCh13G004810.1 | Cmo13g00481 | 394536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00481 | 173 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 8 | 163 | - | - | |
Cmo13g00481 | 173 | Coils | Coil | 96 | 123 | - | - | |
Cmo13g00481 | 173 | MobiDBLite | consensus disorder prediction | 131 | 154 | - | - | |
Cmo13g00481 | 173 | MobiDBLite | consensus disorder prediction | 131 | 153 | - | - | |
Cmo13g00481 | 173 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 163 | - | - | |
Cmo13g00481 | 173 | Pfam | Lateral organ boundaries (LOB) domain | 17 | 114 | IPR004883 | - | |
Cmo13g00481 | 173 | ProSiteProfiles | LOB domain profile. | 16 | 117 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g02055 | Cmo-Chr11:13918212 | Cmo13g00481 | Cmo-Chr13:5814170 | 2.67E-55 | dispersed | |
Cmo13g00481 | Cmo-Chr13:5814170 | Cmo13g00196 | Cmo-Chr13:1406230 | 7.42E-51 | dispersed | |
Cmo13g00481 | Cmo-Chr13:5814170 | Cmo04g00129 | Cmo-Chr4:659700 | 1.26E-59 | transposed | |
Cmo13g00481 | Cmo-Chr13:5814170 | Cmo04g01166 | Cmo-Chr4:5949123 | 2.04E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10820 | PF03195 | LOB | 2.00E-43 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00481 | - | - | csv:101202930 | 300.056 |