Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00481 ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGTGTATTCGCGCCATACTTCCCCGCCGACCAGCCCCATAAGTTCGCCAATGTCCACAAGGTGTTCGGCGCCAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGGGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGGGTGCGTGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA 522 55.56 MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5814170 5816280 - CmoCh13G004810.1 Cmo13g00481 394536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00481 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 8 163 - -
Cmo13g00481 173 Coils Coil 96 123 - -
Cmo13g00481 173 MobiDBLite consensus disorder prediction 131 154 - -
Cmo13g00481 173 MobiDBLite consensus disorder prediction 131 153 - -
Cmo13g00481 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 163 - -
Cmo13g00481 173 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cmo13g00481 173 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g02055 Cmo-Chr11:13918212 Cmo13g00481 Cmo-Chr13:5814170 2.67E-55 dispersed
Cmo13g00481 Cmo-Chr13:5814170 Cmo13g00196 Cmo-Chr13:1406230 7.42E-51 dispersed
Cmo13g00481 Cmo-Chr13:5814170 Cmo04g00129 Cmo-Chr4:659700 1.26E-59 transposed
Cmo13g00481 Cmo-Chr13:5814170 Cmo04g01166 Cmo-Chr4:5949123 2.04E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10820 PF03195 LOB 2.00E-43 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00481 - - csv:101202930 300.056