Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00518 ATGTCTCTCCTTAGACCTTATGGTAAGGTCGATGAATCCGATCAAATGAGGCTCGACGCTAGCCGAAGGACTCGGAAGAGGGTCATTGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTGTTGTTGTTGCTGTTGTGTTCGGGACTAGAAATAGTTCCAAGAACGACGAGAGTGACAATCACAATGAGGCTCTTTCAACTTCGATAAAAGCAGTTTGTGATGAGACTTTGTATCCCGATACTTGTAAGAATGCTTTTGGTTCTCTAGCTAACTCGTCCCACCTCGACCCTGGTCAAATAGCCAAGTTTTCGGTTCAACTCGCGCTCGGTGAACTGTCGCGAGTGGCTGATTACCTTTTGGAGCATGCCATTACCAATTCAACTGATAATAAGACCATATTAGCTTTGAGAAGTTGTCATGAACTTTTGGACTTGGCAATAGATCATCTAAATGACTCATTATCATCAAGTGAGATTACAGTGCTGAAAGCTGTGGATGATTTGAAAACATGGCTAAGTTCAGCAGCTACTTACCAGCAAACTTGCATCGACGGGCTCGAGGAAGTCGATCTCGCTTTGACGAATGTCATCGCAAATTACTTGAAGAACTCTACTGAAATGACCAGCAATGGCCTTGCCATTGTGTCCTTCTTTTCGAAGCTAACGGATTCTTTCAGTCTACGACGATTGATGAGTTATGAAGATCGACATAGCAATGGAGATTGGGCGCGCCCGATACTCCGGAAGCTAGCTCAAAAGGATCTCCGGAAGCAGGCCGACATCGTCGTAGCGAAAGACAAATCGGGGAAGTACAAAACAATCACTGAAGCTCTCAATGCTGTACCTGATAAGAGCAAGAAGAGAACTGTGATCTATGTGAAGAAGGGAGTTTACAAGGAGAATGTTGAAGTTGTGAAGAACAAATGGAATGTAGTGATGATTGGCGATGGAATGACTTCAACCACTGTAACTGGCAGGCTCAACTTCATAGATGGGACGCCAACATTTTCTACTGCAACATTTGCTGCAAAGGGAAAAGGCTTCATTGCCATAGACATGGGATTTGAGAACACAGCTGGACCGAGCAAACACCAGGCGGTTGCTCTGATGTCGACGTCGGACCAATCGATCTTCTACCGCTGCCAAATGAATGCATACCAAGACACTCTCTATGCACACTCGAACCGTCAATTCTACCGTGACTGCAAGGTTTACGGCACGGTCGATTTCATCTTTGGAAACTCAGCAGTAGTCCTACAAAACTGCAAAATTGCACCAAAGTTGCCTCTTTTAGGCCAAAAGAACACAATCACTGCTCAAGGCCGGTTTGATCCTAATCAACACACTGGCATTTCAATACAACACTCTTCAATCCAACCGTTCGAAAACTTGAAAACTACCGAAACTTACCTCGGTCGTCCATGGAAGAACTACTCGACGACCGTGTTTATGCAGAACGATTTCGGTAGCTTGATTCACCCAACTGGCTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATCTTCTATGCTGAGTTTCAAAACAAAGGCCCTGGTTCTTCCACAGCCAACAGAGTGAAATGGAAAGGTTTGAAGAATATTGACACCAAAACTGCCAAGAAATTCACTGTTTCCTCTTTCATTCACGGTAAAGATTGGATCTCAAAGGCTCAAGTCCCCTTCAATGCCACCCTCTGA 1701 44.97 MSLLRPYGKVDESDQMRLDASRRTRKRVIVIVLSSVVLVGVVVAVVFGTRNSSKNDESDNHNEALSTSIKAVCDETLYPDTCKNAFGSLANSSHLDPGQIAKFSVQLALGELSRVADYLLEHAITNSTDNKTILALRSCHELLDLAIDHLNDSLSSSEITVLKAVDDLKTWLSSAATYQQTCIDGLEEVDLALTNVIANYLKNSTEMTSNGLAIVSFFSKLTDSFSLRRLMSYEDRHSNGDWARPILRKLAQKDLRKQADIVVAKDKSGKYKTITEALNAVPDKSKKRTVIYVKKGVYKENVEVVKNKWNVVMIGDGMTSTTVTGRLNFIDGTPTFSTATFAAKGKGFIAIDMGFENTAGPSKHQAVALMSTSDQSIFYRCQMNAYQDTLYAHSNRQFYRDCKVYGTVDFIFGNSAVVLQNCKIAPKLPLLGQKNTITAQGRFDPNQHTGISIQHSSIQPFENLKTTETYLGRPWKNYSTTVFMQNDFGSLIHPTGWLPWVGTSAPDTIFYAEFQNKGPGSSTANRVKWKGLKNIDTKTAKKFTVSSFIHGKDWISKAQVPFNATL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6084982 6087165 - CmoCh13G005180.1 Cmo13g00518 394573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00518 566 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 24-RELATED 19 562 - -
Cmo13g00518 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 219 IPR035513 -
Cmo13g00518 566 PANTHER PECTINESTERASE 19 562 - -
Cmo13g00518 566 SMART PMEI_2 64 214 IPR006501 GO:0004857
Cmo13g00518 566 Pfam Plant invertase/pectin methylesterase inhibitor 68 214 IPR006501 GO:0004857
Cmo13g00518 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 218 IPR035513 -
Cmo13g00518 566 Gene3D - 255 566 IPR012334 -
Cmo13g00518 566 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Cmo13g00518 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 215 IPR006501 GO:0004857
Cmo13g00518 566 CDD PMEI-like_3 71 220 - -
Cmo13g00518 566 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Cmo13g00518 566 SUPERFAMILY Pectin lyase-like 258 564 IPR011050 -
Cmo13g00518 566 Pfam Pectinesterase 260 551 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00518 Cmo-Chr13:6084982 Cmo08g01213 Cmo-Chr8:7701057 9.98E-150 dispersed
Cmo13g01172 Cmo-Chr13:9370936 Cmo13g00518 Cmo-Chr13:6084982 3.58E-19 dispersed
Cmo13g00518 Cmo-Chr13:6084982 Cmo14g01248 Cmo-Chr14:10533283 2.85E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00518 - - csv:101210577 932.554