Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00522 ATGAGTAATTTATCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTGAAAGATTTATTGCTTCAGAAAGATAATCAAGCTTGTGCGGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACACATATCAAAGGTTTTGTCAATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCCTTTATCCCTGTTGGATATACGAAACCTGGACCAAGTGCCAGCCATGAGGATCGCTCAAGGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGCGAATTGTATCCAATAACTCCTCAAAGGAACCTGAGGAGCCAAGTTATTTTGAAGAGATTGTTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTCAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATATGAAGTCCAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACAGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGTTGTCGGTTCCTCAGGAATACGGACCCTTGAAGTTGCAAGTGTTCGATCACGACATAATTTCAGCAAACGACTTAATGGGCGAAGCAGAAATCGACCTCCAACCGATGATAACATCAGCAATGGCATTTGGAGATGCTAAAATGTTTGAGAATATGCAGATAGGAAAATGGTTGAAGTCAGACGACAATGCCCTGATCGACGACAGTGCTGTCGTCATCGTCGACGGGATGGTCAAACAAGAGATGTCACTCAAGCTCCAAAACGTAGAATCAGGTGAAGTGTACTTAGAACTCGAGTGGATGCCTCTTGATCAGTAG 1002 41.72 MSNLSADFRRHESAKSRLKDLLLQKDNQACADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEDRSRFIRSKYELQEFLKPSLRIVSNNSSKEPEEPSYFEEIVDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDHDIISANDLMGEAEIDLQPMITSAMAFGDAKMFENMQIGKWLKSDDNALIDDSAVVIVDGMVKQEMSLKLQNVESGEVYLELEWMPLDQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6123425 6126892 - CmoCh13G005220.1 Cmo13g00522 394577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00522 333 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
Cmo13g00522 333 Gene3D C2 domain 175 333 IPR035892 -
Cmo13g00522 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cmo13g00522 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cmo13g00522 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cmo13g00522 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cmo13g00522 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 144 IPR001164 GO:0005096
Cmo13g00522 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
Cmo13g00522 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Cmo13g00522 333 ProSiteProfiles C2 domain profile. 160 274 IPR000008 -
Cmo13g00522 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Cmo13g00522 333 CDD ArfGap 18 124 - -
Cmo13g00522 333 CDD C2_ArfGAP 177 320 - -
Cmo13g00522 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 333 - -
Cmo13g00522 333 SMART C2_3c 178 273 IPR000008 -
Cmo13g00522 333 Pfam C2 domain 177 267 IPR000008 -
Cmo13g00522 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 333 IPR044518 GO:0005096|GO:0005543
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01445 Cmo13g00522 CCT
Cmo07g00063 Cmo13g00522 CCT
Cmo13g00522 Cmo18g00486 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00522 Cmo-Chr13:6123425 Cmo15g00846 Cmo-Chr15:4284174 3.16E-117 dispersed
Cmo13g00522 Cmo-Chr13:6123425 Cmo18g00486 Cmo-Chr18:3337349 0 wgd
Cmo13g00522 Cmo-Chr13:6123425 Cmo03g01445 Cmo-Chr3:10467242 4.25E-170 wgd
Cmo13g00522 Cmo-Chr13:6123425 Cmo07g00063 Cmo-Chr7:358765 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00522 K12486 - csv:101211569 586.26