Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00523 ATGGCTCTTGCTATGCATAGAGATTCCTTGAATAAGCAAATGGATACCAGCAAGTATGTGAGATATACACCTGAGCAAGTCGATGCATTAGAGAGGGTATATGCTGAATGCCCAAAGCCTAGTTCGTTGAGGAGGCAACAACTCATTCGTGAGTGTCCCATTCTCTCTAATATTGAGCCCAAACAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCGTCTCGTCTTCAAACAGTTAATAGGAAGCTGACTGCGATGAACAAGCTGTTGATGGAAGAGAACGACCGTCTGCAGAAGCAGGTCTCTCGTTTGGTTTACAAGAACGGATACATGAGACAGCAACTGCGCACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACCGCTGTCGACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCTCGAAATTGCAATGGGGTAGCAGCACGAGCCTGTGGGTTAGTGAGTCTTGAGCCAACGAAGGTGGCTGAAATTCTCAAAGATCGTTTGTCGTGGTTTCGTGACTGCCGTTGTGTTGATGTATTAAGTGTAATGTCCACCGGAAATGGGGGGACCATAGAACTCTTGTATACGCAGACATATGCACCGACAACCTTAGCAGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGAAGCCTCGTGATATGTGAGAGATCGTTAACGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCGTGAGAGCTGAAATGCTTCCGAGCGGATATCTTATTCGAGCTTGTGAGGATGGTTCCCTTATTCACATTGTGGATCATGTTGATTTAGATGCTTGGAGCGTTCCTGAAGTTCTTAGGCCACTTTATGAGTCGACAAAGATTCTAGCTCAGAGAAGGACTGTTGCTCTTATGGAAATGGATTTTAGGGGTTTTAATGATGCTGTAAATGGCTTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAGTCGAGGATGTGACGGTTGTTGTTAATTCATCTCCAAACAAATTCATCGGTTCGCAATATAACCAATCATTATATCCTACTTTTGGAGGTGTATTGTGTGCGAAGGCGTCGATGTTGTTGCAGAATGTGCCCCCTGCTTTGCTTGTTCGTTTCTTACGGGAGCATCGTTCAGAATGGGCTGATTATGGAGTCGATGCATACTCGGCCGCATGTCTTAAATCCAGTGCATATGCTGTTCCATGTGCGAGACCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCGCATACCGTTGAAAACGAAGAGTTCTTGGAGGTCGTTCGGTTAGAGGGTCATGCTATGTTCCCTGAAGAAGCTGCGTTAGGTGGGCGGGATATGTATTTATTGCAGCTGTGTAGCGGGGTTGATGAAAGTACAGTCGGTTCCTGCGCTCAGCTTGTATTTGCACCTATCGACGAATCATTTGCCGACGATGCTCCCTTACTACCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGATGCGTCGGCAGCTACTCGAACTTTGGATTTGGCTTCTACTCTAGAAGTCCGTCCTGGATCTGCCCGCCCAGGCGGTGAAACCGATGCTACAAACTACAACCTCAGGTCTGTCTTGACTATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGAACGGTTGTGGCATCAGTTCAGAGGGTTGCCATGGCTATCGCCCCCTCGCAACTTGGCTCCCAAATCGGTCCAAAAAGCCTCCCTAGCTCGCCAGAGGCTCTCACGTTGTCCCAATGGATCGCCCGAAGCTATAGGATCCACACAGGGGCAGAGCTCTTTCAGGTTGAATCCCAGTCTCATGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCGTCTCCTGTGTTCACATTTGCGAACCAAGCCGGGCTTGACATGCTTGAAACTACGCTCGTAGCTCTTCAAGATATAACGCTCGACAAGATCCTTGAGGATGCTGGTAGGAAGATACTGTGCTCAGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCATATCGAGTATGGGCAGGCCGGTGTCGTATGAACAGGCGATTGCCTGGAAAGTTCTGAATGATGATGATGTCCATCACTGTTTGGCTTTCATGTTTGTTAACTGGTCATTTATGTGA 2448 47.63 MALAMHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYKNGYMRQQLRTASGTTTDNSCESVVMSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPTKVAEILKDRLSWFRDCRCVDVLSVMSTGNGGTIELLYTQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEDGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRRTVALMEMDFRGFNDAVNGFVDDGWSLMDSDGVEDVTVVVNSSPNKFIGSQYNQSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSAYAVPCARPGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDESTVGSCAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDASAATRTLDLASTLEVRPGSARPGGETDATNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVASVQRVAMAIAPSQLGSQIGPKSLPSSPEALTLSQWIARSYRIHTGAELFQVESQSHDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDITLDKILEDAGRKILCSEFSKIMQQGFAYLPAGICISSMGRPVSYEQAIAWKVLNDDDVHHCLAFMFVNWSFM 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6138496 6146102 + CmoCh13G005230.1 Cmo13g00523 394578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00523 815 CDD homeodomain 18 78 IPR001356 GO:0003677
Cmo13g00523 815 SUPERFAMILY Bet v1-like 166 354 - -
Cmo13g00523 815 SMART HOX_1 15 81 IPR001356 GO:0003677
Cmo13g00523 815 ProSiteProfiles START domain profile. 156 377 IPR002913 GO:0008289
Cmo13g00523 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 373 815 - -
Cmo13g00523 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 368 - -
Cmo13g00523 815 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cmo13g00523 815 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Cmo13g00523 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 373 815 IPR044830 GO:0003700
Cmo13g00523 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 368 IPR044830 GO:0003700
Cmo13g00523 815 CDD bZIP 70 109 - -
Cmo13g00523 815 Pfam START domain 166 368 IPR002913 GO:0008289
Cmo13g00523 815 Coils Coil 87 107 - -
Cmo13g00523 815 Pfam MEKHLA domain 670 814 IPR013978 -
Cmo13g00523 815 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cmo13g00523 815 Gene3D - 185 366 IPR023393 -
Cmo13g00523 815 SMART START_1 165 374 IPR002913 GO:0008289
Cmo13g00523 815 Gene3D - 10 84 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00065 Cmo13g00523 CCT
Cmo03g01442 Cmo13g00523 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00523 Cmo-Chr13:6138496 Cmo17g00742 Cmo-Chr17:7362109 0 dispersed
Cmo13g00523 Cmo-Chr13:6138496 Cmo03g01442 Cmo-Chr3:10443739 0 wgd
Cmo13g00523 Cmo-Chr13:6138496 Cmo07g00065 Cmo-Chr7:369276 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10824 PF01852 START 5.70E-50 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00523 K09338 - mnt:21408685 1392.1