Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00525 ATGGAGCAATCGAACAGTAACGCCGGTGATGGCCAAGGGATCAGAAGAAGATCCTGTGGCTGTACGAAGGAAGATTTTCTTCCAGAGGAGTCCTTTAAGAGTTGGGGGAATTATACAAAAGCGCTGAAGGCGACGCCAGCTCGCCTCTTGGACCGGCTCATGGCCCGGTCGGCCGAGCACACCGAACTTGTCGAGATGAAGGCTCAAAGCCAGCACGAGATGAAGAAGAGCCTCACGTGGTGGGACCTCATGTGGTTCGGCGTCGGTGCCGTCATCGGCGCCGGAATATTTGTCCTCACAGGTCTCGAGACTAGGAGACACGCCGGCCCTGCCGTCGTCTTGTCTTACATAATCTCCGGTGTCTCCGCCATGCTTTCCGTCTTCTGTTACACTGAGTTTGCCATCGAGATTCCGGCCGCCGTTTCGACACTGGCAGAGGAGACTAAGAACCCGTCTAGAGATATTCCTATTGGTCTTGTTGCGTCCATGGTAATCATCACTTTAGCCTACTGTATTCTTGCGGCTACCCTCTGCCTCATGCAGCCTTACCAGAAGATTGATGAAGACGCACCATTTGCAATGGCTTTTGAAGCCGTTGGATGGGGTTGGGCTAAGTACATTGTTGCTCTCGGTGCTATAAAAGGCATGACCACTGTGCTGTTAGTCAGTGCGGTTGGTCAGGCGCGGTATCTCACGCACATTGCCAGGACCCACATGGTCTCCCCCTGGTTTGCCAAAGTCAATGAAAGAACCGGAACTCCAGTGAACGCAACAGCATCAATGCTGGCTGCAACAGCATTGATTGCCTTCTTCACACCCTTGGAGATAATCTCAAACCTTCTCTCCATTTCCACCCTCTTCATCTTCATGCTGGTAGCCGTAGCCCTTATCGTCCGACGCTACTATGTCAGCGGCGAAACAACGTCGTCCAACAGAAACAAGCTCATAATCTACTTGTTTCTGATAATGGGATCTTCAACCGCAACTGCCATTTACTGGGCCACAAGCGATGAGTGGATCGGCTTCGCAGTAACTGCTCCGATATGGTTCCTCTCAACTCTAGCCCTATGGATCAGCGTCCCACAGGCCAAGAAGCCACTGGTGTGGGGCGTGCCTCTGGTCCCATGGGTGCCTTCAATATCCATCGCCATAAACTTTTTCCTTCTTGGGTCGATCGACGCAGCTTCATTTGAAAGGTTTGCGATCTGGACTGGGATTCTATTGGTTTACTATTTCTTGCTTGGGTTGCACGCTTCTTACGACACTGCCATGGAGTCGAAGATCCAAGCAGCAGAAGAAAGTAATAGCAGTGTGTGA 1317 51.63 MEQSNSNAGDGQGIRRRSCGCTKEDFLPEESFKSWGNYTKALKATPARLLDRLMARSAEHTELVEMKAQSQHEMKKSLTWWDLMWFGVGAVIGAGIFVLTGLETRRHAGPAVVLSYIISGVSAMLSVFCYTEFAIEIPAAVSTLAEETKNPSRDIPIGLVASMVIITLAYCILAATLCLMQPYQKIDEDAPFAMAFEAVGWGWAKYIVALGAIKGMTTVLLVSAVGQARYLTHIARTHMVSPWFAKVNERTGTPVNATASMLAATALIAFFTPLEIISNLLSISTLFIFMLVAVALIVRRYYVSGETTSSNRNKLIIYLFLIMGSSTATAIYWATSDEWIGFAVTAPIWFLSTLALWISVPQAKKPLVWGVPLVPWVPSISIAINFFLLGSIDAASFERFAIWTGILLVYYFLLGLHASYDTAMESKIQAAEESNSSV 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6153955 6157734 - CmoCh13G005250.1 Cmo13g00525 394580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00525 438 Pfam C-terminus of AA_permease 369 419 IPR029485 -
Cmo13g00525 438 Gene3D Amino acid/polyamine transporter I 72 140 - -
Cmo13g00525 438 Gene3D Amino acid/polyamine transporter I 141 366 - -
Cmo13g00525 438 PANTHER CATIONIC AMINO ACID TRANSPORTER 1 140 431 - -
Cmo13g00525 438 PANTHER CATIONIC AMINO ACID TRANSPORTER 1 13 140 - -
Cmo13g00525 438 Pfam Amino acid permease 122 305 IPR004841 GO:0016020|GO:0055085
Cmo13g00525 438 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 140 431 - -
Cmo13g00525 438 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 13 140 - -
Cmo13g00525 438 PIRSF AA_transporter 55 140 - -
Cmo13g00525 438 PIRSF AA_transporter 139 302 - -
Cmo13g00525 438 PIRSF AA_transporter 302 437 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00525 Cmo18g00479 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00525 Cmo-Chr13:6153955 Cmo18g00480 Cmo-Chr18:3306302 3.42E-83 dispersed
Cmo13g00525 Cmo-Chr13:6153955 Cmo18g00479 Cmo-Chr18:3299988 1.04E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00525 K03294 - csv:101212046 491.115