Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00533 ATGTTAGAACAGCTCGCCCGAGTCTCAGACGGGGAGGACCTACCTTACGAATCCGCCATTAATTCCAATTCCAGTCAAAATTCCATGAGCAGTGACAGTTGCAGCAGTTTCAGTCGTCTCTCATTCGACGCCGCCACTGATTTACCCACTTCCCGATCCTCACCGGAGAGTCTTGATTTAAAGCCTCACCGATCATCTGATTTCGCTTACTCTGCTATTCGTCGTCGGAAATCCAAACTCACCTTCCGTGATTTTCGTCTCCTCCGCCGCATCGGCGCCGGTGACATTGGCACCGTCTACCTATGTCAGCTTAGAAACTCAACCGAAGGTTGTTATGAAGATGAAGATGACGATTCCTGTTTGTACGCCATGAAAGTAGTGGATAAGGATGCTCTGGAATTGAAGAAAAAGGTACACAGAGCAGAAATGGAGAGGAAAATATTGAAAATGCTTGACCATCCATTTTTGCCTACGCTTTACGCTGAATTTGAAGCTTCCCATTTCTCTTGCATCGTTATGGAGTTCTGTTCCGGCGGCGATTTGCATTCTCTCCGTCATAAACAGCCGCGGAAACGCTTCTCTCTCGCCTCTGCAAGGTACAGAAACAGAGCATCCTTAAAACTCTGTTTTATATTATTTATCCATTTTCATCATTACTGGAAACACACTGAGATTCTACGTAGATTCCTGGAAAGCTGCAACTCTTCTGGAACGATTGAAATCAAAATATTAATGTTTCAGTATGTTTTTTGTTTGCTTGTGATGTCAAAACCTGAGATGTTTTACGCCGCTGAAGTTCTTGTTGCTTTGGAGTATCTTCACATGCTTGGAATTATTTACAGAGACCTTAAGCCGGAGAATGTTCTTGTCCGATCAGATGGTCATATTATGTTATCGGATTTCGATTTATCTCTCTGTTCCGACGCTACTCCTGCCGTTGAATCGCCGAATTCCTCCCCTAATCCGGCATTGTCCGACTCAACGGCGTTCCCCAGAACCAACGCCGCCGCTTCCGCCTCCACAGCTCCATTTTCCTGCCTCTACAATCGGCTTTTCCGGTCGCGGAAGGTCCAAACCTTGACACCCAACTGGCTCTTTGTTGCGGAGCCTGTCTCCGCTCGGTCGTGCTCCTTCGTCGGTACCCATGAATATGTCTCGCCGGAAGTTGCCGCCGGCGGATCCCACGGCAACGCCGTCGACTGGTGGGCGTTCGGAGTGTTTCTCTACGAGCTGATCTATGGCCGGACGCCTTTCGCAGCGTCATCGAACGAGACGACGCTAAGGAACATCATAAAGAAGCCGTTGACATTTCCGACCACCGGGTCGTCTGGGACGCTTGAACACCACGCGCGGGACCTGATATCCGGGTTGCTAAACAAAGACCCGACCCGAAGACTCGGGTCGAAACGCGGATCCGCCGACATAAAAAAGCACCCGTTCTTCAAGAGCCTGAACTTCGCCCTCATTCGGTCGCTGACTCCGCCGGAAGTCCCCGGAGTTGTAGTACCGCAGAAGCCAAAGCCAAAGCCGATAGCATCAAGCAAAGCCAAGGTGAAGCCGGCTCATTCAGCTGGGTTCGATTACTTCTGA 1590 49.69 MLEQLARVSDGEDLPYESAINSNSSQNSMSSDSCSSFSRLSFDAATDLPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRNSTEGCYEDEDDDSCLYAMKVVDKDALELKKKVHRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLASARYRNRASLKLCFILFIHFHHYWKHTEILRRFLESCNSSGTIEIKILMFQYVFCLLVMSKPEMFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPNPALSDSTAFPRTNAAASASTAPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTTGSSGTLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKSLNFALIRSLTPPEVPGVVVPQKPKPKPIASSKAKVKPAHSAGFDYF 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6233697 6235581 + CmoCh13G005330.1 Cmo13g00533 394588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00533 529 Pfam Protein tyrosine and serine/threonine kinase 87 305 IPR001245 GO:0004672|GO:0006468
Cmo13g00533 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Cmo13g00533 529 ProSiteProfiles Protein kinase domain profile. 85 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00533 529 MobiDBLite consensus disorder prediction 16 36 - -
Cmo13g00533 529 MobiDBLite consensus disorder prediction 500 529 - -
Cmo13g00533 529 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 14 202 - -
Cmo13g00533 529 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 259 508 - -
Cmo13g00533 529 Pfam Protein kinase domain 375 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00533 529 PANTHER FLIPPASE KINASE 1-RELATED 259 508 - -
Cmo13g00533 529 PANTHER FLIPPASE KINASE 1-RELATED 14 202 - -
Cmo13g00533 529 MobiDBLite consensus disorder prediction 1 36 - -
Cmo13g00533 529 SMART serkin_6 85 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00533 529 Gene3D Transferase(Phosphotransferase) domain 1 374 499 - -
Cmo13g00533 529 SUPERFAMILY Protein kinase-like (PK-like) 64 498 IPR011009 -
Cmo13g00533 529 Gene3D Phosphorylase Kinase; domain 1 77 207 - -
Cmo13g00533 529 Gene3D Transferase(Phosphotransferase) domain 1 260 304 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00533 Cmo18g00473 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00533 Cmo-Chr13:6233697 Cmo07g00896 Cmo-Chr7:4259422 8.41E-118 dispersed
Cmo13g00533 Cmo-Chr13:6233697 Cmo18g00473 Cmo-Chr18:3196968 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74766 PF07714 PK_Tyr_Ser-Thr 1.20E-16 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00533 - - csv:101208129 681.789