Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00540 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGCCGCCGGAAGGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCACTCGCGTTGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAACAAAGAGGTCGATGCCCAGATCCCGAATTACCCGAGTTTACCGCCACAACTCATCTGTCAGCTTCATAACCTCACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCACAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAAGAAGCCTACCTTCCAGCTGAGTTGGGGTCTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACAGCTAGTGATACGAGCACACATGGCGGTTTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTATTCCCCCCTTTGTTCATGATTTCTTCTGATGATATTGGTGCAATGCAGGACTTCTCCATGCAGCCCCCAGCTCAAGAGCTGATAGCGAGGGACTTGCATGATAATGAATGGAAATTTAGACATATATTTCGTGTTGGGCTTGGAGAAATGGAGAGCTGGCTTCCATGTTTTAATTGCCTCGACGTTCTTGATATGTTTGTTGCAGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTGTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTTCTTTTTATCTGGAATGAGAAGAACCAATTACTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCTGTTTTGTCAAGTGATAGTATGCATTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCTACCAACAGTCGATTTACCATATTTTTTAACCCAAGAGCTAGTCCTTCAGAGTTTGTCATACCACTCACTAAATACGTGAAGGCTGTCTACCATACTCGTGTTTCTGTTGGTATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGTTTGCTTTCAGCTTCTTTAGTTGAGTACCGACGTTTTGATAACTGGGATTCGATGTGTATTCATATTTTCGTAATATTTCTTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCGGTCAAGGTTGGCTGGGACGAATCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCTCCATTTCCACTTCGGCTGAAGCGACCATGGCCAACGGGACTGCCTTCTTTCGGTAAGTTAGCACCATCACTCCAGCATCAACAATGTGTCAACATGACTGCATTTTACTTTCTGTTCTTCCTGACAATGAAATTCATACTCATGTTAACTCCTCTATATGTTTCTCTCTTAGGCATCAAGGATAGCGACCTCGGAATGAATTCTCCGTTCATGTGGCTACGGGGAGATAATTGTCTAAATTTTCAGGGAAACGGGGTCTCACCGTGGATGCAGCCAAGGCTTGATACATCCATGATGGCAATGCAACCTGACATGTACCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATCGATTATTCGAAAATAGCACCTGCATCTGTTCTGCAATTCCAGCAGTCCCAAGGCCTTCCTTGTCAGTCTTCTTCCTTAATGCAGCCTCAGATGATGCATCAGTCTCAACCCCAGCAGGCGTTTCTACAATCCATTCAAGAAAACCAGCAGCATCATCTTCAGCCACAATTGCAGCCCCAGCAATTCAATAATCAACAACAGCAACCAAGGCAGCCACAGCCACCGCAACTCGATCATCAGCAGATTCCTTGTACGATACCGGCGGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTTGCCGTCCCTGCAAACCATCCCTTCCCTTTGCCAACAACCGAGTTTTTCCGACTCCAATTGTAACCCTGTAACTACTACTGTTTCCCCATTGCATAGCCTTGCGGGGTCGTCATCTGTTCAAGACGAATCGTCTCAGCTGCTTAACCTTCAAAGAGCAAATTCAATAATTCCTTCAGCTGGTTGGCCAGCAAAGAGAGCTGCTATTGACCCTCTCACTACTGGAGCTTCTCAATATTTTCTGCCTCAAGGGGAAATTTTGGGAACATCACAGAGTAGTATTCCTCAGAATACTGTGGCATTGCCACCCTTCCCTGGAAGGGAGTGTTCTAACGATGACCGAGACGACGGTTCCGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTTCATCCCTTTTAATGCAGAATGGGGCGTCACACCTTAGGGGAGTCGGCAATGACAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACCATGACATCCTCAAATTGCATCGACGAGTCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCATCCACCCAATGGAACCTTTGTCAAGTATATGCTGAATCCATCTGGCCACACATTTTTTGTACAGGTTCACAAGTCAGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTTGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAGCAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCATGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGTACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTAGTTTCAGGGATAACCTCTGTCGGGCCTCTCGACTACTGA 3003 46.75 MRLSAAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGTRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGSPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLFMISSDDIGAMQDFSMQPPAQELIARDLHDNEWKFRHIFRVGLGEMESWLPCFNCLDVLDMFVAGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRLLSASLVEYRRFDNWDSMCIHIFVIFLRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGKLAPSLQHQQCVNMTAFYFLFFLTMKFILMLTPLYVSLLGIKDSDLGMNSPFMWLRGDNCLNFQGNGVSPWMQPRLDTSMMAMQPDMYQAMATAALQEMRAIDYSKIAPASVLQFQQSQGLPCQSSSLMQPQMMHQSQPQQAFLQSIQENQQHHLQPQLQPQQFNNQQQQPRQPQPPQLDHQQIPCTIPAAISQFASCSQSQLPSLQTIPSLCQQPSFSDSNCNPVTTTVSPLHSLAGSSSVQDESSQLLNLQRANSIIPSAGWPAKRAAIDPLTTGASQYFLPQGEILGTSQSSIPQNTVALPPFPGRECSNDDRDDGSDPQNHVLFGVNIESSSLLMQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNHPPNGTFVKYMLNPSGHTFFVQVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWCIKILSPEEVHEMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLVSGITSVGPLDY 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6272616 6277857 + CmoCh13G005400.1 Cmo13g00540 394595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00540 1000 Pfam Auxin response factor 289 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo13g00540 1000 ProSiteProfiles PB1 domain profile. 867 951 IPR000270 GO:0005515
Cmo13g00540 1000 PANTHER AUXIN RESPONSE FACTOR 6 220 979 - -
Cmo13g00540 1000 PANTHER AUXIN RESPONSE FACTOR 6 1 196 - -
Cmo13g00540 1000 Gene3D - 864 956 - -
Cmo13g00540 1000 SUPERFAMILY DNA-binding pseudobarrel domain 112 292 IPR015300 -
Cmo13g00540 1000 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 220 979 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo13g00540 1000 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 196 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo13g00540 1000 ProSiteProfiles B3 DNA-binding domain profile. 127 265 IPR003340 GO:0003677
Cmo13g00540 1000 MobiDBLite consensus disorder prediction 611 631 - -
Cmo13g00540 1000 SUPERFAMILY CAD & PB1 domains 862 942 - -
Cmo13g00540 1000 Pfam AUX/IAA family 865 956 IPR033389 -
Cmo13g00540 1000 SMART B3_2 127 265 IPR003340 GO:0003677
Cmo13g00540 1000 CDD B3_DNA 126 263 IPR003340 GO:0003677
Cmo13g00540 1000 Pfam B3 DNA binding domain 221 264 IPR003340 GO:0003677
Cmo13g00540 1000 Gene3D - 327 427 - -
Cmo13g00540 1000 Gene3D - 125 264 IPR015300 -
Cmo13g00540 1000 MobiDBLite consensus disorder prediction 754 773 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01425 Cmo13g00540 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02359 Cmo-Chr4:17596031 Cmo13g00540 Cmo-Chr13:6272616 0 dispersed
Cmo13g00540 Cmo-Chr13:6272616 Cmo15g00807 Cmo-Chr15:3977365 0 dispersed
Cmo13g00540 Cmo-Chr13:6272616 Cmo18g00468 Cmo-Chr18:3127927 0 wgd
Cmo13g00540 Cmo-Chr13:6272616 Cmo03g01425 Cmo-Chr3:10309688 0 wgd
Cmo13g00540 Cmo-Chr13:6272616 Cmo07g00080 Cmo-Chr7:500794 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10825 PF02309 AUX_IAA 2.90E-05 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00540 - - csv:101211705 1479.15