Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00546 ATGGACGGCGGAGGTGGGAGGTTGAAGGCTTCGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTAGGTGAAGGAAACTTCGCCAAGGTCAAGTTTGCTCGGAACACGGAGACCGATGACAACGTGGCGATCAAAATTCTCGACAAGGAGAAAGTTCTTAAGCACAAGATGATCAGTCAGATTAAACGCGAGATAGCAACAATGAAATTAATTAGGCATCCAAATGTTATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGATAAGATAGTTAGCAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCCGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTCCGGGAAGATGGATTACTGCACACAACTTGTGGAACACCAAACTATGTTGCTCCAGAGGTGATCAATAATAAAGGCTATGACGGGGCAAAGGCTGACTTATGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATTTACCTTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGATACACAAGGCTGAGTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAATTAATCAAAAGAATTTTGGATCCCAATCCCGCTACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCCCCCACTTTTGAACAAGCTGATATTAGTCTGGATGATGTGGATGCTATCTTCAATGAAACAGGGGTTTCGGGTAATCTCGTAGTGGAAAGGAAAGAGGAAAGACCTGCAGCCCCTCTTACGATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGAGAAACAAGGTTCACATCCAATCGACCTGCGAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGGCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCGGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAAACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAGGATGGAGACGAAGGAGATAGTGGTTTGTGCGAGTGCGAGTGCGAGTGTCTCGAAGCCGAGGTAATTATGTTTCTCTGGAAGTTGTTTGATATTGGGTTGAAGTTTGAGATAGTGGATAATACAGTCATGTACCTTGATTTTAAACTCATATGGTGTTTTTTCTGTCATTTGATTTAG 1524 41.73 MDGGGGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETDDNVAIKILDKEKVLKHKMISQIKREIATMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKAEFTCPPWFSTNAKKLIKRILDPNPATRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGVSGNLVVERKEERPAAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDGDEGDSGLCECECECLEAEVIMFLWKLFDIGLKFEIVDNTVMYLDFKLIWCFFCHLI 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6316667 6322931 - CmoCh13G005460.1 Cmo13g00546 394601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00546 507 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00546 507 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Cmo13g00546 507 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165
Cmo13g00546 507 SUPERFAMILY Protein kinase-like (PK-like) 21 290 IPR011009 -
Cmo13g00546 507 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Cmo13g00546 507 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Cmo13g00546 507 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00546 507 MobiDBLite consensus disorder prediction 1 23 - -
Cmo13g00546 507 PANTHER SERINE/THREONINE KINASE 18 452 - -
Cmo13g00546 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Cmo13g00546 507 Gene3D Kinase associated domain 1, KA1 321 446 - -
Cmo13g00546 507 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 452 - -
Cmo13g00546 507 CDD STKc_SnRK3 23 278 - -
Cmo13g00546 507 CDD CIPK_C 327 442 - -
Cmo13g00546 507 Pfam NAF domain 323 383 IPR004041 GO:0007165
Cmo13g00546 507 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01419 Cmo13g00546 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01011 Cmo-Chr6:7945376 Cmo13g00546 Cmo-Chr13:6316667 0 dispersed
Cmo06g01587 Cmo-Chr6:11133172 Cmo13g00546 Cmo-Chr13:6316667 5.96E-153 dispersed
Cmo10g00582 Cmo-Chr10:2651442 Cmo13g00546 Cmo-Chr13:6316667 0 dispersed
Cmo12g00137 Cmo-Chr12:856866 Cmo13g00546 Cmo-Chr13:6316667 0 dispersed
Cmo13g00546 Cmo-Chr13:6316667 Cmo14g02202 Cmo-Chr14:15688817 0 dispersed
Cmo17g00389 Cmo-Chr17:2420324 Cmo13g00546 Cmo-Chr13:6316667 2.46E-156 dispersed
Cmo02g01223 Cmo-Chr2:7357307 Cmo13g00546 Cmo-Chr13:6316667 0 transposed
Cmo13g00546 Cmo-Chr13:6316667 Cmo03g01419 Cmo-Chr3:10261849 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74767 PF00069 Pkinase 4.60E-74 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00546 - - csv:101222334 857.44