Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00546 | ATGGACGGCGGAGGTGGGAGGTTGAAGGCTTCGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTAGGTGAAGGAAACTTCGCCAAGGTCAAGTTTGCTCGGAACACGGAGACCGATGACAACGTGGCGATCAAAATTCTCGACAAGGAGAAAGTTCTTAAGCACAAGATGATCAGTCAGATTAAACGCGAGATAGCAACAATGAAATTAATTAGGCATCCAAATGTTATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGATAAGATAGTTAGCAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCCGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTCCGGGAAGATGGATTACTGCACACAACTTGTGGAACACCAAACTATGTTGCTCCAGAGGTGATCAATAATAAAGGCTATGACGGGGCAAAGGCTGACTTATGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATTTACCTTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGATACACAAGGCTGAGTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAATTAATCAAAAGAATTTTGGATCCCAATCCCGCTACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCCCCCACTTTTGAACAAGCTGATATTAGTCTGGATGATGTGGATGCTATCTTCAATGAAACAGGGGTTTCGGGTAATCTCGTAGTGGAAAGGAAAGAGGAAAGACCTGCAGCCCCTCTTACGATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGAGAAACAAGGTTCACATCCAATCGACCTGCGAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGGCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCGGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAAACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAGGATGGAGACGAAGGAGATAGTGGTTTGTGCGAGTGCGAGTGCGAGTGTCTCGAAGCCGAGGTAATTATGTTTCTCTGGAAGTTGTTTGATATTGGGTTGAAGTTTGAGATAGTGGATAATACAGTCATGTACCTTGATTTTAAACTCATATGGTGTTTTTTCTGTCATTTGATTTAG | 1524 | 41.73 | MDGGGGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETDDNVAIKILDKEKVLKHKMISQIKREIATMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKAEFTCPPWFSTNAKKLIKRILDPNPATRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGVSGNLVVERKEERPAAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDGDEGDSGLCECECECLEAEVIMFLWKLFDIGLKFEIVDNTVMYLDFKLIWCFFCHLI | 507 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6316667 | 6322931 | - | CmoCh13G005460.1 | Cmo13g00546 | 394601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00546 | 507 | Pfam | Protein kinase domain | 24 | 279 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00546 | 507 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 103 | - | - | |
Cmo13g00546 | 507 | ProSiteProfiles | NAF domain profile. | 321 | 345 | IPR018451 | GO:0007165 | |
Cmo13g00546 | 507 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 290 | IPR011009 | - | |
Cmo13g00546 | 507 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524 | |
Cmo13g00546 | 507 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 286 | - | - | |
Cmo13g00546 | 507 | ProSiteProfiles | Protein kinase domain profile. | 24 | 279 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g00546 | 507 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo13g00546 | 507 | PANTHER | SERINE/THREONINE KINASE | 18 | 452 | - | - | |
Cmo13g00546 | 507 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo13g00546 | 507 | Gene3D | Kinase associated domain 1, KA1 | 321 | 446 | - | - | |
Cmo13g00546 | 507 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 18 | 452 | - | - | |
Cmo13g00546 | 507 | CDD | STKc_SnRK3 | 23 | 278 | - | - | |
Cmo13g00546 | 507 | CDD | CIPK_C | 327 | 442 | - | - | |
Cmo13g00546 | 507 | Pfam | NAF domain | 323 | 383 | IPR004041 | GO:0007165 | |
Cmo13g00546 | 507 | SMART | serkin_6 | 24 | 279 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01419 | Cmo13g00546 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01011 | Cmo-Chr6:7945376 | Cmo13g00546 | Cmo-Chr13:6316667 | 0 | dispersed | |
Cmo06g01587 | Cmo-Chr6:11133172 | Cmo13g00546 | Cmo-Chr13:6316667 | 5.96E-153 | dispersed | |
Cmo10g00582 | Cmo-Chr10:2651442 | Cmo13g00546 | Cmo-Chr13:6316667 | 0 | dispersed | |
Cmo12g00137 | Cmo-Chr12:856866 | Cmo13g00546 | Cmo-Chr13:6316667 | 0 | dispersed | |
Cmo13g00546 | Cmo-Chr13:6316667 | Cmo14g02202 | Cmo-Chr14:15688817 | 0 | dispersed | |
Cmo17g00389 | Cmo-Chr17:2420324 | Cmo13g00546 | Cmo-Chr13:6316667 | 2.46E-156 | dispersed | |
Cmo02g01223 | Cmo-Chr2:7357307 | Cmo13g00546 | Cmo-Chr13:6316667 | 0 | transposed | |
Cmo13g00546 | Cmo-Chr13:6316667 | Cmo03g01419 | Cmo-Chr3:10261849 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74767 | PF00069 | Pkinase | 4.60E-74 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00546 | - | - | csv:101222334 | 857.44 |