Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00573 ATGGCGGCCTCTGCAATGGCTCTCTCCTCTCCGTCGCTTGCCGGGAAGGCAGTGAAACTCACTCCCTCCTCCTCGGAGATTGTCGGCAATGGCAGAGTCAGCATGAGGAAATCCGCCGCCAAATCTGTTTCTTCTGGAAGCCTATGGTACGGACCTGACCGTGTCAAGTATTTGGGTCCATTCTCCGGCGAGTCTCCGTCCTACCTCACCGGGGAGTTCCCCGGTGACTATGGCTGGGACACTGCCGGACTTTCTGCTGACCCTGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTTATCCACTCCAGGTGGGCTATGCTCGGAGCATTGGGGTGCGTGTTCCCGGAGCTTCTATCCCGCAACGGCGTGAAGTTTGGGGAAGCGGTGTGGTTCAAGGCAGGTTCACAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCATCGCAGGTGGTTCTGATGGGGGCGGTGGAGGGATACCGTATTGCGGGTGGGCCATTGGGGGAGGTGACGGATCCGATATACCCGGGTGGGAGCTTTGACCCGTTGGGACTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAGGTGAAGGAGCTTAAGAATGGAAGACTGGCCATGTTCTCCATGTTTGGCTTCTTCGTTCAGGCCATCGTGACTGGAAAGGGCCCATTGGAGAATCTTGCCGATCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTACGCCACCAACTTTGTCCCTGGAAAATAA 798 56.64 MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6475233 6477048 - CmoCh13G005730.1 Cmo13g00573 394628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00573 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Cmo13g00573 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Cmo13g00573 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Cmo13g00573 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cmo13g00573 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00276 Cmo-Chr1:1287223 Cmo13g00573 Cmo-Chr13:6475233 2.48E-172 dispersed
Cmo04g00986 Cmo-Chr4:4982617 Cmo13g00573 Cmo-Chr13:6475233 6.22E-120 dispersed
Cmo13g00573 Cmo-Chr13:6475233 Cmo20g00287 Cmo-Chr20:1389168 0 dispersed
Cmo16g00863 Cmo-Chr16:4590539 Cmo13g00573 Cmo-Chr13:6475233 7.74E-117 dispersed
Cmo13g00573 Cmo-Chr13:6475233 Cmo03g01376 Cmo-Chr3:10108407 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00573 K08912 - cpap:110819729 514.227