Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00587 ATGCCATGTTCTTCCTGTACAAAGCACTTCTTCCAGCGCTTCTTCACCGACGAGTTCCAAACCAACGGCGCTCTTCAAAGCACTTTCTTGTCCCCTGACCTGTTGCCATCTCTCGGCGCCACCATCAACCAATCCACCAAGCTTCGTAAACACATCATTTCCCCTTTCAACCCTCGTTATCGAGCATGGGAGATGTGGCTGGTGGCTCTAGTCATTTACTCTGCTTGGATTTGTCCTTTCGAATTCGCATTCCTTCCCTACAAACAAAATGCTCTGTTCATCATAGATCACTTCGTCAATGCCTTCTTCGCCGTCGATATCGTTTTGACTTTCTTCGTCGCCTATCTTGACTCTCAATCTTATCTTCTCGTTGACCACCCCAAGAAAATTGCAGTCAGGTACTTATCGACTTGGTTTATTTTCGACGTTTGTTCGACGGCGCCATTGCAGTCGATTAGTTTCTTGTTCACCAATCAAAGTGGGGAAGTTGGGTTTAAGCTTCTGAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTTGAAAAGGACATCAGGTTCAATTATTTCTGGACCCGTTGCACAAAGTTGATTTCTGTAACGTTATTTGCAGTACATTGTGCTGGGTGCTTCAATTACTTAATAGCCGACAAATATCCGGACCCAAAACGAACATGGATTGGTGCAGTGAACCCAAATTTCAAGGAAGATAGCCTATGGAACCTTTATATTACTGCAATTTACTGGTCCATTACCACCTTAACCACCACTGGCTATGGCGATCTCCATGCAGAGAACCCCAGAGAAATGCTTTTTGACATATTTTACATGCTCTTCAACTTAGGCTTGACTTCTTATCTCATCGGTAACATGACGAATCTCGTCGTCCATTGGACGAGTCGCACTCGAAACTTCAGGGATTCGGTTCGAGCTGCCACGGAGTTCGCGTCGAGAAATCAGCTACCGAACCCCATACAAGACCAGATGCTGTCTCATATATGTCTCAAGTTTAGAACCGAAGGGCTTAAGCAGCAAGACACATTGAATGACCTTCCAAAGGCCATTAGAGTCTCCATAGCTCACTATCTCTTTTATCCTATTGTTCAGAAGGCCTACCTCTTTGAAGGAGTTTCTCATGACTTCCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTATTTCCCACCAAAGGAAGATGTTATACTCCAAAGTGAAGCTCAAACGGATCTCTATATATTGGTTTCAGGCAGTGTGGATTTAATATCCAAAATTGATGGGCATGATCAAGTTATTGGAAGAGCAACAGGTGGAGATACATTCGGAGAATTTGGAGTTTTATGTCAAAAGCCGCAGCCATTGACAGTTAGAACAACAAATCTTTCGCAAATTTTAAGGATCAAGAGAGCTTCTTTGTTGTATATTATTCAATCAAACACAGATGATGGGAATATTATCATGAACAATTTTTTCATGAAAATGAAGGAATATGAAGGAATAATGGGGAATGTTTGGTGTGATGGTGGGCTAAAGAAGCTTGGAGATGAGGATGAAAATTTGGGAAGCTTAGATGAACATAGAATTGAGTTTGATGAACAGCTTGAAGGAGGTGAAAACGACATTAATTTGTCTCATAACAACAAGTTACTAGCAAGAGATGGAGGTTTTCGGTCGGATTTTATTAGTTCCTCGGTAGAAAACTTGCCCACGAGCTCTTACTCGAATGTCTCGAGACAAATCAAGAAAAGGGTTACTGTATTTATACAGCCTCGAGATAGAAGCACGGTTGAAAGTCGATATGGAAAGTTAATGCTTCTCCCGAATTCGATCGAAGAGCTCTGTAAAGTTGCTGGTGAGAAGTTTGGAAGGGAAATGCCCACAAAAGTGATGAATGCAGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATAATGATATTGAAAAATGTGGTCTCAAATGA 2004 42.12 MPCSSCTKHFFQRFFTDEFQTNGALQSTFLSPDLLPSLGATINQSTKLRKHIISPFNPRYRAWEMWLVALVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAVDIVLTFFVAYLDSQSYLLVDHPKKIAVRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYLIADKYPDPKRTWIGAVNPNFKEDSLWNLYITAIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSVRAATEFASRNQLPNPIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRVSIAHYLFYPIVQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDVILQSEAQTDLYILVSGSVDLISKIDGHDQVIGRATGGDTFGEFGVLCQKPQPLTVRTTNLSQILRIKRASLLYIIQSNTDDGNIIMNNFFMKMKEYEGIMGNVWCDGGLKKLGDEDENLGSLDEHRIEFDEQLEGGENDINLSHNNKLLARDGGFRSDFISSSVENLPTSSYSNVSRQIKKRVTVFIQPRDRSTVESRYGKLMLLPNSIEELCKVAGEKFGREMPTKVMNADNAEIDDINVIRDGDHLFLLYNNDIEKCGLK 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6533380 6536788 - CmoCh13G005870.1 Cmo13g00587 394642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00587 667 SUPERFAMILY Voltage-gated potassium channels 55 300 - -
Cmo13g00587 667 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Cmo13g00587 667 Gene3D - 61 301 - -
Cmo13g00587 667 PANTHER POTASSIUM CHANNEL KAT1 5 656 - -
Cmo13g00587 667 SUPERFAMILY cAMP-binding domain-like 305 494 IPR018490 -
Cmo13g00587 667 CDD CAP_ED 378 491 IPR000595 -
Cmo13g00587 667 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo13g00587 667 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo13g00587 667 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo13g00587 667 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo13g00587 667 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo13g00587 667 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo13g00587 667 Pfam Cyclic nucleotide-binding domain 398 483 IPR000595 -
Cmo13g00587 667 ProSiteProfiles KHA domain profile. 587 667 IPR021789 -
Cmo13g00587 667 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo13g00587 667 SMART cnmp_10 378 495 IPR000595 -
Cmo13g00587 667 Gene3D Jelly Rolls 342 501 IPR014710 -
Cmo13g00587 667 Pfam KHA, dimerisation domain of potassium ion channel 586 655 IPR021789 -
Cmo13g00587 667 PANTHER POTASSIUM CHANNEL AKT1 5 656 IPR045319 GO:0005249|GO:0006813
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00587 Cmo18g00440 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01592 Cmo-Chr1:12216357 Cmo13g00587 Cmo-Chr13:6533380 0 dispersed
Cmo04g00566 Cmo-Chr4:2810012 Cmo13g00587 Cmo-Chr13:6533380 2.97E-156 dispersed
Cmo09g00495 Cmo-Chr9:2271903 Cmo13g00587 Cmo-Chr13:6533380 0 dispersed
Cmo10g00620 Cmo-Chr10:2810905 Cmo13g00587 Cmo-Chr13:6533380 1.45E-07 dispersed
Cmo11g00553 Cmo-Chr11:2690138 Cmo13g00587 Cmo-Chr13:6533380 6.14E-07 dispersed
Cmo13g00587 Cmo-Chr13:6533380 Cmo16g00413 Cmo-Chr16:1923154 1.33E-174 dispersed
Cmo13g00587 Cmo-Chr13:6533380 Cmo18g00440 Cmo-Chr18:2880696 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00587 K21867 - csv:101215858 1116.68