Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00596 ATGGAGAATAGTCGGGGAGGAGGAAGAGGGATGGCGGCGTTTTCGTCCTCGGCGGAAAGCAATACCAGGGCTCGTCCGAGCAATACAGCTAGCACCGACAACAGAGCTGCGGCACTTGTGCAATACAATGCTGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAACTATTCGAGATCAGTTCTTGAAGCTCCACAGTCTGTACCTGAAGAACAAATTACTGCTTATCTGTCTAAGATTCAGAGGGGTGGAATGGTTCAGCCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTCTTAAGATTATTAGCTATAGTGAGAATTGTTTTGAATTATTGGGGATAAATGATCAGTTTGAGTCGGCACCGGGGAAGGGTCTAATTGGGGTTCATATAAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCTAAAGCGGCTTCATCCAGGGAGATTTCGCTGTTGAATCCTGTTTGGGTTTATTCTAGGAATACCCAGAAGCCATTTTATGCCATACTGCATAGGATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCACTGTCGCTTGCCGGCGCCGTGCATTCGCAGAAACTTGCGGTTCGAGCCATTTCCAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAAGATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCGGACTTGGAGCCATATCTCGGTTTGCACTATCCTGCCATTGATATACCCCAAGCTGCTCGTTTCTTGTTCAAGCAGAACCGCGTTAGGATGATTTGCGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCACCACATAGTTGTCATTTGCAGTACATGGCAAATATGGGTTCCATAGCCTCATTGGCAATGGCAGTAATCATGAACAGTGATGACTCTCCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCACCACGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCTTTCGGGCTGCAACTTTATATGGAGCTTCAATTGGCATTACAAATAACAGAGAAAAAGGTTCTCAAGACACAAACCTTACTCTGTGACATGCTCCTCCGAGGCTCCCCTTATGCATTGCTGACCCAGTCACCTAGTATAAAGGATCTCGTGAAGTGTGATGGCGCTGCATTGTACTATCAGGGGGCATGCTGTCTACTAGGTGTAACTCCAACTGAAGCCCAAGTTAAAAACCTTGTCGAGTGGATACTCAATAACCATGGAGATTCTACAGGACTGAGCACGGATAGCTTGGCTGATGCTGGCTATCCCGAAGCTGCTTCACTAGGTGATGCAATATGTGGTATGACTGCTGCAAGAATTAGTTCAAAAGATTTCTTATTCTGGTTCCGTTCCCATGCCGCAAAAGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCAAGGTCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAAAAGTATGTCATGGGAAGCTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATTATGAGGGAGTCTTTCTCGAGCGCTAGAGACAGTGATTCGAAGGCAGAAATGTCTGTCCAGCAGAGTGATACTGTGTCTCAGGACATCGGCGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGATTAATTGAAACAGCAACCGCTCCAATTTTTGGGGTTGACTCAACTGGTGTGATCAATGGATGGAATGCTAAAATAGCTGAACTCGTAGGATTACAAACTGGAGAAGCTTTGGGGAGATCTCTGGATGAAATCGTTCATGACGATTCACGTGGAACTGTTGGAAATTTAGTTCTTCATGCTCTGCAAGGTGTGGAAGACAAAAATGTGGAGTTAAAACTGAGAAAGTTTGGAACTGATAAAGAAAACTCTGCTGTGTATATTGTAGTTAATGCTTGCACAAGTAGGAATTACACAAATAAAGTTATTGGGGTTTGCTTTGTTGGGCAAGATATAACGTCGGAGAAGGGCATGAGGGATAGATTTATCCGTCTGCAGGGAGATTATAGGACAATTATTGAAAGTCTGAGTCCATTGATTCCACCAATTTTCGTTTCGGACGAGAATGGTTACTGCTGTGAATGGACTGCTGCCATGGAGAAGCTTTCTGGTTGGAGTAAAGATGAAGTTATAGGAAAAATGCTTGTAGGGGAGATTTTTGGGAACTTCTGTAGGTTGAAAGATCTAGATACCCTCACTAGGTTTATGATCCTATTATATCAAGGCATTGGTGGTGAACAAACTGAGAAGTTTCCATTAGGATTTTTCAATAAGAATGGTAACTATATGGAGGTGCTTTTAACATCAAACAAAAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGTTTCCTGCAAGTTGTTGAGCCAAACTTGCAAGGGGTCTCTGAAGGACTCGGCCTGGGCGAAAGACGGGGCAATTTGCAGCTTAAGGAGTTGACTTACTTAAAGCGGGAGATGAAAAATCCTTTAAATGGCATCAAATTTACTCATGAACTCCTTGTAAATTCTGGCATTACAGACAACCAGAAACTCTTCCTTGTTACTAGTGATGCGTGCGAGAGACAGATCATGGCGATCATTGAGGATATGGACTTCAGAAGTTTAGAAGTGGGCCAAGTACAGATAAACAGAGACGAGTTTGTCCTCGGGAGTGTTCTGGATGCAATTATCTGTCAAATCATGATTGTTGTCAGAGAGAAGAACATACAACTTTTTCATGAAATTCCAGAAGAAATCAAAGTGTTAACTCTTTGTGGCGATCAAATTAAACTTCAGCTGGTTTTATCAGATTTCTTACTTAGCGTAGTGCAGAACACGCCTGCTCTGGACGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGAGTTCAGAGCAAGGCCTCGCCCTAAATCTGTCACGCAGACTTCTCAATAAATTGAACGTGCTGAAATCCAGCAGAGTCCCAGCACATTCATGTCACCTTGCATACAACCAGTCCTACACACGTTGCGATGCTAAGCGTGATTTCGTGTTAGATTGTATTCGATTTGACGAGTCGGATGTAGCTACTTCTCAGATTCTAGAAAGTGTGGAAGCTCCGACAGGATTTGTTGAAATTGGTTACATATCCAATGTTCATGGGACTGAGGGGGAAGTTCGAGTGAAACCTGTTACTGATTTTCCTGAACTGCGATTCTCCACGCCTGGCACAAGATGGTTGAAGCAGCAAGTTTCGGGAAGGGAAGAAATCCGAGAAGTTGACTTGGAAGAGGGGAGGGAACACCCTGGTCGAAAGAGTTGGATACTGAAGTTTAAAGGAATCGATACTGCTGAACAGGCAAAACTACTCATTGGATCAACTCTCCTAGTGAGGGAAGAAGACCGACCAGAGTTGGAAGAAGGTGAATTTTATTCCCGTGACCTTATTGGCATGAGTGTTATTCTGAAGGAAACTGGTCAGTCCCTGGGAACCGTTGTTAATGTATTTGATAGCGGAGGGGCGGATCTTTTGCATGTCTTGCTTGATAGTTCCGAAGATATTCTTGATGCCACTGGAAATCCAACATCAACAGAGACTGGAGTTTCTGGTCGCCTTGTTTGGATACCTTTTGTCAAAGCAATTGTTCCTGTTGTTGATCTTGAAAGACGAGAAATGAAAATTACCCCTCCAAAAGGTCTTTTGGAATTAAATTTGAATTCTAACAAGAGATCAAAGAAAGAACGACGCCAACTTGAATGGAAAGAAAGGAAAAAATTCCAAAACAGTCTCATAGCTGCAAAAAAGAAACTGTCTGAAATGGAGCAGAAACACGTGTTCAATGGTTTCAAATTTGGAGAAAAAATGCAGGGAAGGTTACTTGCCGAACAGATAGTTGGTGTCAATTCTAAGTTGCTTCAAAAAGCTTTACAAGATATTGAGATTCCTACAAGAAGATTGAATGTTAACGAGTTATTCAACGCTTTTGAATTGGAGAAAATACAAAATACTTTGAAGGTATCAGATAAATGTGTCACTTCTGGTGCAAATGAAGAGGAACTTGGTAAACATACTAGTTTGCAGAAGAAGGGACTCAATCTCATATCTTCTGGAAAAACTGCCGTTGTTTTAGTTGTTAATGATGAGGGATGGTACGCTGACCTTGATATTGTTTGTGATAATGCTGAGCATCCAACATCTTCTTCCCTTCCTGATCTACTTGGTGATGATAGGAGGTTTGCAAAGGTCATTGAAGACCGCCCATACGTGCCTCTGATTTTGGTGTGCTCAGCTTCCAGAATTCATTCAATTGAAAAGCTTTTTATGGACAATGATTACTTTTCCTTCGATTCTGGAAAGATCTGGTTTTTGGAAGAACAGAGACTTCCAGTTGTTAGCAATGTGGTAGACGAACAAAACAAATACAAGATTTTGATGAAATCACCCTGGGAAATTCTACAATCCCCAGTTGGTTCTGGAGGAGTCATAAACTTGCTCTCATCATCCAAGGTTCTGGACAATCTTGCTGAAATTGGCGTGGAGTATGTCGAGATTTGCAGCAGCAGGCATAGAAGTGCAGGCACCAACGCTCTACTTCTTGGGTATATTGCATCGTGCAGTGCTAATATCGGGGTGAAGCTTCAAAAAGGTAGCAGTGGCTTTGAGAAAAGCTTTGAGTTGATATTCTCAATGAACTTCATGAAGAAAATGATGAAGCAAATGGATAAGCCTCAGTTCTATGGCATCCCCAAATCAAATGCGCACGTTGAGAAGGTTGACAAGGAGTGGGTTGACAACGTTCCTCCATCGGATCATTTACCCATCAGTCTCAACGAAAAATCTAGGTCCGGAACGGAATAA 5172 42.88 MENSRGGGRGMAAFSSSAESNTRARPSNTASTDNRAAALVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPQSVPEEQITAYLSKIQRGGMVQPFGCLLAIEESSLKIISYSENCFELLGINDQFESAPGKGLIGVHIRALFTPSSGASLAKAASSREISLLNPVWVYSRNTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVHSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSIASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQITEKKVLKTQTLLCDMLLRGSPYALLTQSPSIKDLVKCDGAALYYQGACCLLGVTPTEAQVKNLVEWILNNHGDSTGLSTDSLADAGYPEAASLGDAICGMTAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSKSMSWEAQEINAIHSLQLIMRESFSSARDSDSKAEMSVQQSDTVSQDIGELSSVACEMVRLIETATAPIFGVDSTGVINGWNAKIAELVGLQTGEALGRSLDEIVHDDSRGTVGNLVLHALQGVEDKNVELKLRKFGTDKENSAVYIVVNACTSRNYTNKVIGVCFVGQDITSEKGMRDRFIRLQGDYRTIIESLSPLIPPIFVSDENGYCCEWTAAMEKLSGWSKDEVIGKMLVGEIFGNFCRLKDLDTLTRFMILLYQGIGGEQTEKFPLGFFNKNGNYMEVLLTSNKRTDAEGNVIGCICFLQVVEPNLQGVSEGLGLGERRGNLQLKELTYLKREMKNPLNGIKFTHELLVNSGITDNQKLFLVTSDACERQIMAIIEDMDFRSLEVGQVQINRDEFVLGSVLDAIICQIMIVVREKNIQLFHEIPEEIKVLTLCGDQIKLQLVLSDFLLSVVQNTPALDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWSSEQGLALNLSRRLLNKLNVLKSSRVPAHSCHLAYNQSYTRCDAKRDFVLDCIRFDESDVATSQILESVEAPTGFVEIGYISNVHGTEGEVRVKPVTDFPELRFSTPGTRWLKQQVSGREEIREVDLEEGREHPGRKSWILKFKGIDTAEQAKLLIGSTLLVREEDRPELEEGEFYSRDLIGMSVILKETGQSLGTVVNVFDSGGADLLHVLLDSSEDILDATGNPTSTETGVSGRLVWIPFVKAIVPVVDLERREMKITPPKGLLELNLNSNKRSKKERRQLEWKERKKFQNSLIAAKKKLSEMEQKHVFNGFKFGEKMQGRLLAEQIVGVNSKLLQKALQDIEIPTRRLNVNELFNAFELEKIQNTLKVSDKCVTSGANEEELGKHTSLQKKGLNLISSGKTAVVLVVNDEGWYADLDIVCDNAEHPTSSSLPDLLGDDRRFAKVIEDRPYVPLILVCSASRIHSIEKLFMDNDYFSFDSGKIWFLEEQRLPVVSNVVDEQNKYKILMKSPWEILQSPVGSGGVINLLSSSKVLDNLAEIGVEYVEICSSRHRSAGTNALLLGYIASCSANIGVKLQKGSSGFEKSFELIFSMNFMKKMMKQMDKPQFYGIPKSNAHVEKVDKEWVDNVPPSDHLPISLNEKSRSGTE 1723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6604946 6618467 + CmoCh13G005960.1 Cmo13g00596 394651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00596 1723 SMART HisKA_10 888 952 IPR003661 GO:0000155|GO:0007165
Cmo13g00596 1723 SUPERFAMILY GAF domain-like 407 584 - -
Cmo13g00596 1723 Pfam RimM N-terminal domain 1150 1239 IPR002676 GO:0006364
Cmo13g00596 1723 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Cmo13g00596 1723 CDD PAS 625 731 IPR000014 -
Cmo13g00596 1723 TIGRFAM 16S_RimM: 16S rRNA processing protein RimM 1149 1338 IPR011961 GO:0005840|GO:0006364|GO:0043022
Cmo13g00596 1723 Pfam PAS fold 82 195 IPR013654 GO:0006355
Cmo13g00596 1723 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1089 - -
Cmo13g00596 1723 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1369 1688 IPR029044 -
Cmo13g00596 1723 Pfam Phytochrome region 412 586 IPR013515 GO:0006355|GO:0009584
Cmo13g00596 1723 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Cmo13g00596 1723 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Cmo13g00596 1723 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
Cmo13g00596 1723 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1356 1661 IPR029044 -
Cmo13g00596 1723 Gene3D - 1243 1343 - -
Cmo13g00596 1723 Gene3D RimM 1140 1241 IPR036976 GO:0006364
Cmo13g00596 1723 SUPERFAMILY Translation proteins 1148 1242 IPR009000 -
Cmo13g00596 1723 Gene3D PAS domain 615 735 - -
Cmo13g00596 1723 Gene3D - 404 577 IPR043150 -
Cmo13g00596 1723 SUPERFAMILY PRC-barrel domain 1248 1338 IPR011033 -
Cmo13g00596 1723 MobiDBLite consensus disorder prediction 1703 1723 - -
Cmo13g00596 1723 Hamap Ribosome maturation factor RimM [rimM]. 1148 1338 IPR011961 GO:0005840|GO:0006364|GO:0043022
Cmo13g00596 1723 Gene3D - 931 1094 IPR036890 -
Cmo13g00596 1723 Pfam PAS fold 747 867 IPR013767 GO:0006355
Cmo13g00596 1723 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cmo13g00596 1723 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Cmo13g00596 1723 SMART gaf_1 228 409 IPR003018 GO:0005515
Cmo13g00596 1723 CDD HisKA 899 948 IPR003661 GO:0000155|GO:0007165
Cmo13g00596 1723 Gene3D - 209 560 IPR029016 -
Cmo13g00596 1723 Gene3D PAS domain 86 331 - -
Cmo13g00596 1723 SUPERFAMILY PYP-like sensor domain (PAS domain) 749 863 IPR035965 -
Cmo13g00596 1723 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cmo13g00596 1723 Coils Coil 1361 1381 - -
Cmo13g00596 1723 SUPERFAMILY GAF domain-like 210 395 - -
Cmo13g00596 1723 SMART pas_2 616 682 IPR000014 -
Cmo13g00596 1723 SMART pas_2 746 816 IPR000014 -
Cmo13g00596 1723 PANTHER PHYTOCHROME E 34 1089 - -
Cmo13g00596 1723 MobiDBLite consensus disorder prediction 14 34 - -
Cmo13g00596 1723 Gene3D PAS domain 760 870 - -
Cmo13g00596 1723 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cmo13g00596 1723 CDD PAS 758 868 IPR000014 -
Cmo13g00596 1723 ProSiteProfiles Histidine kinase domain profile. 895 1099 IPR005467 -
Cmo13g00596 1723 Pfam GAF domain 228 399 IPR003018 GO:0005515
Cmo13g00596 1723 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 727 IPR035965 -
Cmo13g00596 1723 TIGRFAM sensory_box: PAS domain S-box protein 748 865 IPR000014 -
Cmo13g00596 1723 TIGRFAM sensory_box: PAS domain S-box protein 621 738 IPR000014 -
Cmo13g00596 1723 Pfam PRC-barrel domain 1245 1339 IPR027275 -
Cmo13g00596 1723 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01491 Cmo-Chr3:10671732 Cmo13g00596 Cmo-Chr13:6604946 2.04E-07 dispersed
Cmo07g00029 Cmo-Chr7:180339 Cmo13g00596 Cmo-Chr13:6604946 1.36E-07 dispersed
Cmo13g00596 Cmo-Chr13:6604946 Cmo14g01619 Cmo-Chr14:12864015 0 dispersed
Cmo13g00596 Cmo-Chr13:6604946 Cmo18g00427 Cmo-Chr18:2811865 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00596 K12123 - csv:101214900 1855.88