Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00604 ATGATCGAAGGTACAGAAATGGAGTTCCCCGAGTGCCCTGTTTGCCTGCAAACGTACGACGGCGAGTCCACAGTTCCTCGTGTTCTCTCTTGTGGCCACTCAGCCTGCGGAACCTGCCTCGACAATCTCCCTCAGCGATACCCCGAAACCATTCGATGTCCCGCCTGCAACGTTCTCGTGAAATTCCCCTCTCATGGCGCTTCGGCTCTCCCCAAAAACATCGACCTCCTCAGACTCTGCCCCCAACACAACGCCGATCAGCAAATTTCCAAAAAACCCATCAATCAAAACCACGAGATGTTTCCTCGGCTCTGGTCTGATGAATTCTACAAAGCTTGGAAGCACTGGGTCCTGCCGCACGCCGCCGTTTCGATCGAGCGGAGAGATGCCGACGACGGAGTTGAGCAACTGTTGCTGGGAAGAATTGCTCCCAGTTCAGATTCAGATTCTTCTTTCCCGATTAGGGTTGGAGAAGACCGAACTGTAAGTCTTGTTCGAGTCGTTTCGTTGCCTTGTTCTAATAGTGATTATGTGTTTAAGCTTAGTTATACATCAATGGTTCTGAAATGCTTGAGTGAGTTGAAGGATGGGGAGAGAAATGAACTGGGTTTGATTTTGGGAGCTGGTATCATGAATGGTGGAAGAATGTGTAGAACATATGGGTTATGGGGTAATTTGGAGGATGGATTTCTGTACTTAGTATGTGAGAGACGCAATGATAACTTAGTGGATAGGATTAACAATTGGATTAAGAAACTTGATATCAGAAACAAGGTTGGCTTGAACAAAGATGACTTATGCAGTTTTGCCTTGATTGCCACCGAGTTATGTGAAGCAATCATCGCTATGCATTCTCTGAGGTTAAGTATTGGCTTTCTTAGTCTTTCATGTTTTGGTGTTGGTGAATTTGGTAGTGTTTGTGTTGATTTAAATGGGGTTTTGACGACGGGAAGAACTGTTCGAACAGCGGTGGAAGCTGTTTCTACCGGATCAAAACTCGATACCAAGGAACTGGGAATTATTATTAGTAATCTGATGAAGAAGGAGGTTTTTGTCAGCCCGGAGGTATTACTCAAATTACTGCATAAAGAAGACGTTGTGCCGGAATGTGGCACGACTCTATGCTCGGTCGGGAACAAGTGCGATATTTGGTGTTTGGCGTTTGTTTTGCTGAGTCTTCTTCTCGGAAAGGAATGCATTGTGGTGAGTTTTGAAGAAATTCATTCTGATTGCTCTGTCTTTTATGGGAGTTGGGTGGAGAAAGTTAATTCTTGTTTGAACACGAAGTTCGGTTCGGAGTATTCATCATTGAATCAGACACTCTGCCGTTCTTTAAGTTTTAATCCCGAAAACCGTCCATGTGTTGTTGAACTGTTGAGATGCTTTAGGGAACTGATTGTTGGTTCTGAGTTGGATGCTTTGGGCAGTTTGAAACTTGTAGTTGATGAATATGGTGCTGATCATTGCTTGGTTCTGGGGGATCTCATTCAACTTCCCCACGAATTGACTGAAACTCAGAGCGACGATATGGATCGAATTGGGGCGGAAAGAACAACTAAAGCTTTTGTTGATGGGCTATCAGCTGGAATGGTGAAGTCCAGCGACATGCTCGGCCATCGTGATAGCATTACTGGTTTAGTAGTTGGTGGGGGTTATCTGTTTAGCTCGTCATATGATAAGACGGTCCAAGCATGGTCTTTACAAGACTTCTCTCATGTACATACATTTATCGGGCACGAGCATCGTATAACGGATTTGGCATATATCGATGAAGAACAGCCGTTGTGTGTAAGTGCTGATATTGGTGGTGGTATATATGTCTGGAGCATTGCTCTTCCTCTCAAGCACGATCCATTGAAGAAATGGTACGAGGAGAAGGATTGGCGCTACGATGGTATTCATGCGTTGGCCTACTCCGAAAATGGGTGCCTTCATACCGGTGGAGGCGATAGATCTATTAAAGCATGGTCATTGAAGGATGGCACCTTATCTGGCTCCATGCATGGTCATAGGTCAGTAGTTTCTGCTCTTCTGGCTAGTAATGGCATTCTTTACAGTGGCAGTTGGGATGGAACTGTTCGGTTATGGAGTCTTTCCGATCGTAGTCAGTTGGCCGTGCTCGGGGAAGAATCAACTGGAAGTTTGGGTTCTGTTCTGTGTCTTGCTGCTAACACGGACATACTTCTTTGGAGGAACGATGTATTTATGAAAACCATGAAACTACACGATGGCGCCATATTCGCCATCAGCATGCTGGGGAAACAACTCGTCACCGGGGGTCGGGACAAGGCCATAAATGTACAGGCAAGCGGCCCCATGGGTTACCCAGATGAGATGCAGAAGCAGAAGCAGAAGCAGAAGCAAGCAGGTGAAGAACAGTCGCAACCACGAAGAAGTGGTCGAGGGAAGATTGAAATCAAGAGAATTGAAAACACAACAAATCGCCAAGTCACTTTCTGTAAACGCAGAAATGGTTTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTCGCTCTTATTGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCCAACAACAGTGTTAGGGCTACGATTTCGAGGTACAAAAAGGCATGCTCGGATCCCTTAAGCGCCGGGTCCGTTTCGGAAGCCAATACACAGTTCTACGAGCAAGAATCCGCGAAATTGCGAGCGCAAATCGGGAATATGCAAAACCTAAACAGGTAA 2724 45.89 MIEGTEMEFPECPVCLQTYDGESTVPRVLSCGHSACGTCLDNLPQRYPETIRCPACNVLVKFPSHGASALPKNIDLLRLCPQHNADQQISKKPINQNHEMFPRLWSDEFYKAWKHWVLPHAAVSIERRDADDGVEQLLLGRIAPSSDSDSSFPIRVGEDRTVSLVRVVSLPCSNSDYVFKLSYTSMVLKCLSELKDGERNELGLILGAGIMNGGRMCRTYGLWGNLEDGFLYLVCERRNDNLVDRINNWIKKLDIRNKVGLNKDDLCSFALIATELCEAIIAMHSLRLSIGFLSLSCFGVGEFGSVCVDLNGVLTTGRTVRTAVEAVSTGSKLDTKELGIIISNLMKKEVFVSPEVLLKLLHKEDVVPECGTTLCSVGNKCDIWCLAFVLLSLLLGKECIVVSFEEIHSDCSVFYGSWVEKVNSCLNTKFGSEYSSLNQTLCRSLSFNPENRPCVVELLRCFRELIVGSELDALGSLKLVVDEYGADHCLVLGDLIQLPHELTETQSDDMDRIGAERTTKAFVDGLSAGMVKSSDMLGHRDSITGLVVGGGYLFSSSYDKTVQAWSLQDFSHVHTFIGHEHRITDLAYIDEEQPLCVSADIGGGIYVWSIALPLKHDPLKKWYEEKDWRYDGIHALAYSENGCLHTGGGDRSIKAWSLKDGTLSGSMHGHRSVVSALLASNGILYSGSWDGTVRLWSLSDRSQLAVLGEESTGSLGSVLCLAANTDILLWRNDVFMKTMKLHDGAIFAISMLGKQLVTGGRDKAINVQASGPMGYPDEMQKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQESAKLRAQIGNMQNLNR 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6645765 6652718 - CmoCh13G006040.1 Cmo13g00604 394659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00604 907 Gene3D - 531 619 IPR015943 GO:0005515
Cmo13g00604 907 PRINTS MADS domain signature 801 821 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 PRINTS MADS domain signature 836 857 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 PRINTS MADS domain signature 821 836 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 Pfam RING-type zinc-finger 12 54 IPR027370 -
Cmo13g00604 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 575 IPR001680 GO:0005515
Cmo13g00604 907 Gene3D - 620 768 IPR015943 GO:0005515
Cmo13g00604 907 ProSiteProfiles Zinc finger RING-type profile. 12 57 IPR001841 -
Cmo13g00604 907 SUPERFAMILY SRF-like 800 873 IPR036879 GO:0003677|GO:0046983
Cmo13g00604 907 SMART ring_2 12 56 IPR001841 -
Cmo13g00604 907 PANTHER - 6 769 IPR044715 -
Cmo13g00604 907 Gene3D Transferase(Phosphotransferase) domain 1 227 466 - -
Cmo13g00604 907 ProSiteProfiles MADS-box domain profile. 799 859 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 699 - -
Cmo13g00604 907 SUPERFAMILY WD40 repeat-like 536 768 IPR036322 GO:0005515
Cmo13g00604 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 706 IPR001680 GO:0005515
Cmo13g00604 907 Gene3D - 811 876 IPR036879 GO:0003677|GO:0046983
Cmo13g00604 907 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 808 855 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 6 769 - -
Cmo13g00604 907 SUPERFAMILY RING/U-box 10 64 - -
Cmo13g00604 907 SUPERFAMILY Protein kinase-like (PK-like) 226 468 IPR011009 -
Cmo13g00604 907 CDD RING-HC_TRIM32_C-VII 11 56 - -
Cmo13g00604 907 SMART madsneu2 799 858 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 MobiDBLite consensus disorder prediction 768 805 - -
Cmo13g00604 907 SMART WD40_4 569 609 IPR001680 GO:0005515
Cmo13g00604 907 SMART WD40_4 615 657 IPR001680 GO:0005515
Cmo13g00604 907 SMART WD40_4 660 697 IPR001680 GO:0005515
Cmo13g00604 907 SMART WD40_4 529 566 IPR001680 GO:0005515
Cmo13g00604 907 SMART WD40_4 732 769 IPR001680 GO:0005515
Cmo13g00604 907 CDD MADS_MEF2_like 800 876 IPR033896 GO:0000977|GO:0045944
Cmo13g00604 907 Pfam WD domain, G-beta repeat 664 697 IPR001680 GO:0005515
Cmo13g00604 907 ProSitePatterns MADS-box domain signature. 801 855 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 MobiDBLite consensus disorder prediction 780 805 - -
Cmo13g00604 907 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 92 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01352 Cmo13g00604 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00933 Cmo-Chr5:7329580 Cmo13g00604 Cmo-Chr13:6645765 2.55E-06 dispersed
Cmo12g00664 Cmo-Chr12:4351989 Cmo13g00604 Cmo-Chr13:6645765 7.39E-07 dispersed
Cmo13g00604 Cmo-Chr13:6645765 Cmo01g00877 Cmo-Chr1:4761861 2.84E-29 dispersed
Cmo13g00604 Cmo-Chr13:6645765 Cmo20g00279 Cmo-Chr20:1353372 7.15E-53 wgd
Cmo13g00604 Cmo-Chr13:6645765 Cmo03g01352 Cmo-Chr3:9999265 1.41E-58 wgd
Cmo13g00604 Cmo-Chr13:6645765 Cmo07g00148 Cmo-Chr7:816489 2.55E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10830 PF00319 SRF-TF 1.70E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00604 - - csv:101212974 1254.58