Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00604 ATGATCGAAGGTACAGAAATGGAGTTCCCCGAGTGCCCTGTTTGCCTGCAAACGTACGACGGCGAGTCCACAGTTCCTCGTGTTCTCTCTTGTGGCCACTCAGCCTGCGGAACCTGCCTCGACAATCTCCCTCAGCGATACCCCGAAACCATTCGATGTCCCGCCTGCAACGTTCTCGTGAAATTCCCCTCTCATGGCGCTTCGGCTCTCCCCAAAAACATCGACCTCCTCAGACTCTGCCCCCAACACAACGCCGATCAGCAAATTTCCAAAAAACCCATCAATCAAAACCACGAGATGTTTCCTCGGCTCTGGTCTGATGAATTCTACAAAGCTTGGAAGCACTGGGTCCTGCCGCACGCCGCCGTTTCGATCGAGCGGAGAGATGCCGACGACGGAGTTGAGCAACTGTTGCTGGGAAGAATTGCTCCCAGTTCAGATTCAGATTCTTCTTTCCCGATTAGGGTTGGAGAAGACCGAACTGTAAGTCTTGTTCGAGTCGTTTCGTTGCCTTGTTCTAATAGTGATTATGTGTTTAAGCTTAGTTATACATCAATGGTTCTGAAATGCTTGAGTGAGTTGAAGGATGGGGAGAGAAATGAACTGGGTTTGATTTTGGGAGCTGGTATCATGAATGGTGGAAGAATGTGTAGAACATATGGGTTATGGGGTAATTTGGAGGATGGATTTCTGTACTTAGTATGTGAGAGACGCAATGATAACTTAGTGGATAGGATTAACAATTGGATTAAGAAACTTGATATCAGAAACAAGGTTGGCTTGAACAAAGATGACTTATGCAGTTTTGCCTTGATTGCCACCGAGTTATGTGAAGCAATCATCGCTATGCATTCTCTGAGGTTAAGTATTGGCTTTCTTAGTCTTTCATGTTTTGGTGTTGGTGAATTTGGTAGTGTTTGTGTTGATTTAAATGGGGTTTTGACGACGGGAAGAACTGTTCGAACAGCGGTGGAAGCTGTTTCTACCGGATCAAAACTCGATACCAAGGAACTGGGAATTATTATTAGTAATCTGATGAAGAAGGAGGTTTTTGTCAGCCCGGAGGTATTACTCAAATTACTGCATAAAGAAGACGTTGTGCCGGAATGTGGCACGACTCTATGCTCGGTCGGGAACAAGTGCGATATTTGGTGTTTGGCGTTTGTTTTGCTGAGTCTTCTTCTCGGAAAGGAATGCATTGTGGTGAGTTTTGAAGAAATTCATTCTGATTGCTCTGTCTTTTATGGGAGTTGGGTGGAGAAAGTTAATTCTTGTTTGAACACGAAGTTCGGTTCGGAGTATTCATCATTGAATCAGACACTCTGCCGTTCTTTAAGTTTTAATCCCGAAAACCGTCCATGTGTTGTTGAACTGTTGAGATGCTTTAGGGAACTGATTGTTGGTTCTGAGTTGGATGCTTTGGGCAGTTTGAAACTTGTAGTTGATGAATATGGTGCTGATCATTGCTTGGTTCTGGGGGATCTCATTCAACTTCCCCACGAATTGACTGAAACTCAGAGCGACGATATGGATCGAATTGGGGCGGAAAGAACAACTAAAGCTTTTGTTGATGGGCTATCAGCTGGAATGGTGAAGTCCAGCGACATGCTCGGCCATCGTGATAGCATTACTGGTTTAGTAGTTGGTGGGGGTTATCTGTTTAGCTCGTCATATGATAAGACGGTCCAAGCATGGTCTTTACAAGACTTCTCTCATGTACATACATTTATCGGGCACGAGCATCGTATAACGGATTTGGCATATATCGATGAAGAACAGCCGTTGTGTGTAAGTGCTGATATTGGTGGTGGTATATATGTCTGGAGCATTGCTCTTCCTCTCAAGCACGATCCATTGAAGAAATGGTACGAGGAGAAGGATTGGCGCTACGATGGTATTCATGCGTTGGCCTACTCCGAAAATGGGTGCCTTCATACCGGTGGAGGCGATAGATCTATTAAAGCATGGTCATTGAAGGATGGCACCTTATCTGGCTCCATGCATGGTCATAGGTCAGTAGTTTCTGCTCTTCTGGCTAGTAATGGCATTCTTTACAGTGGCAGTTGGGATGGAACTGTTCGGTTATGGAGTCTTTCCGATCGTAGTCAGTTGGCCGTGCTCGGGGAAGAATCAACTGGAAGTTTGGGTTCTGTTCTGTGTCTTGCTGCTAACACGGACATACTTCTTTGGAGGAACGATGTATTTATGAAAACCATGAAACTACACGATGGCGCCATATTCGCCATCAGCATGCTGGGGAAACAACTCGTCACCGGGGGTCGGGACAAGGCCATAAATGTACAGGCAAGCGGCCCCATGGGTTACCCAGATGAGATGCAGAAGCAGAAGCAGAAGCAGAAGCAAGCAGGTGAAGAACAGTCGCAACCACGAAGAAGTGGTCGAGGGAAGATTGAAATCAAGAGAATTGAAAACACAACAAATCGCCAAGTCACTTTCTGTAAACGCAGAAATGGTTTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTCGCTCTTATTGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCCAACAACAGTGTTAGGGCTACGATTTCGAGGTACAAAAAGGCATGCTCGGATCCCTTAAGCGCCGGGTCCGTTTCGGAAGCCAATACACAGTTCTACGAGCAAGAATCCGCGAAATTGCGAGCGCAAATCGGGAATATGCAAAACCTAAACAGGTAA 2724 45.89 MIEGTEMEFPECPVCLQTYDGESTVPRVLSCGHSACGTCLDNLPQRYPETIRCPACNVLVKFPSHGASALPKNIDLLRLCPQHNADQQISKKPINQNHEMFPRLWSDEFYKAWKHWVLPHAAVSIERRDADDGVEQLLLGRIAPSSDSDSSFPIRVGEDRTVSLVRVVSLPCSNSDYVFKLSYTSMVLKCLSELKDGERNELGLILGAGIMNGGRMCRTYGLWGNLEDGFLYLVCERRNDNLVDRINNWIKKLDIRNKVGLNKDDLCSFALIATELCEAIIAMHSLRLSIGFLSLSCFGVGEFGSVCVDLNGVLTTGRTVRTAVEAVSTGSKLDTKELGIIISNLMKKEVFVSPEVLLKLLHKEDVVPECGTTLCSVGNKCDIWCLAFVLLSLLLGKECIVVSFEEIHSDCSVFYGSWVEKVNSCLNTKFGSEYSSLNQTLCRSLSFNPENRPCVVELLRCFRELIVGSELDALGSLKLVVDEYGADHCLVLGDLIQLPHELTETQSDDMDRIGAERTTKAFVDGLSAGMVKSSDMLGHRDSITGLVVGGGYLFSSSYDKTVQAWSLQDFSHVHTFIGHEHRITDLAYIDEEQPLCVSADIGGGIYVWSIALPLKHDPLKKWYEEKDWRYDGIHALAYSENGCLHTGGGDRSIKAWSLKDGTLSGSMHGHRSVVSALLASNGILYSGSWDGTVRLWSLSDRSQLAVLGEESTGSLGSVLCLAANTDILLWRNDVFMKTMKLHDGAIFAISMLGKQLVTGGRDKAINVQASGPMGYPDEMQKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQESAKLRAQIGNMQNLNR 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6645765 6652718 - CmoCh13G006040.1 Cmo13g00604 394659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00604 907 Gene3D - 531 619 IPR015943 GO:0005515
Cmo13g00604 907 PRINTS MADS domain signature 801 821 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 PRINTS MADS domain signature 836 857 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 PRINTS MADS domain signature 821 836 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 Pfam RING-type zinc-finger 12 54 IPR027370 -
Cmo13g00604 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 575 IPR001680 GO:0005515
Cmo13g00604 907 Gene3D - 620 768 IPR015943 GO:0005515
Cmo13g00604 907 ProSiteProfiles Zinc finger RING-type profile. 12 57 IPR001841 -
Cmo13g00604 907 SUPERFAMILY SRF-like 800 873 IPR036879 GO:0003677|GO:0046983
Cmo13g00604 907 SMART ring_2 12 56 IPR001841 -
Cmo13g00604 907 PANTHER - 6 769 IPR044715 -
Cmo13g00604 907 Gene3D Transferase(Phosphotransferase) domain 1 227 466 - -
Cmo13g00604 907 ProSiteProfiles MADS-box domain profile. 799 859 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 699 - -
Cmo13g00604 907 SUPERFAMILY WD40 repeat-like 536 768 IPR036322 GO:0005515
Cmo13g00604 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 706 IPR001680 GO:0005515
Cmo13g00604 907 Gene3D - 811 876 IPR036879 GO:0003677|GO:0046983
Cmo13g00604 907 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 808 855 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 6 769 - -
Cmo13g00604 907 SUPERFAMILY RING/U-box 10 64 - -
Cmo13g00604 907 SUPERFAMILY Protein kinase-like (PK-like) 226 468 IPR011009 -
Cmo13g00604 907 CDD RING-HC_TRIM32_C-VII 11 56 - -
Cmo13g00604 907 SMART madsneu2 799 858 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 MobiDBLite consensus disorder prediction 768 805 - -
Cmo13g00604 907 SMART WD40_4 569 609 IPR001680 GO:0005515
Cmo13g00604 907 SMART WD40_4 615 657 IPR001680 GO:0005515
Cmo13g00604 907 SMART WD40_4 660 697 IPR001680 GO:0005515
Cmo13g00604 907 SMART WD40_4 529 566 IPR001680 GO:0005515
Cmo13g00604 907 SMART WD40_4 732 769 IPR001680 GO:0005515
Cmo13g00604 907 CDD MADS_MEF2_like 800 876 IPR033896 GO:0000977|GO:0045944
Cmo13g00604 907 Pfam WD domain, G-beta repeat 664 697 IPR001680 GO:0005515
Cmo13g00604 907 ProSitePatterns MADS-box domain signature. 801 855 IPR002100 GO:0003677|GO:0046983
Cmo13g00604 907 MobiDBLite consensus disorder prediction 780 805 - -
Cmo13g00604 907 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 92 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00604 - - - csv:101212974 1254.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g01352 Cmo13g00604 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00933 Cmo-Chr5:7329580 Cmo13g00604 Cmo-Chr13:6645765 2.55E-06 dispersed
Cmo12g00664 Cmo-Chr12:4351989 Cmo13g00604 Cmo-Chr13:6645765 7.39E-07 dispersed
Cmo13g00604 Cmo-Chr13:6645765 Cmo01g00877 Cmo-Chr1:4761861 2.84E-29 dispersed
Cmo13g00604 Cmo-Chr13:6645765 Cmo20g00279 Cmo-Chr20:1353372 7.15E-53 wgd
Cmo13g00604 Cmo-Chr13:6645765 Cmo03g01352 Cmo-Chr3:9999265 1.41E-58 wgd
Cmo13g00604 Cmo-Chr13:6645765 Cmo07g00148 Cmo-Chr7:816489 2.55E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g290 . . . . . . . Bma01g01473 Cmo13g00604 . Cma03g01355 Cma07g00152 Car03g01215 Car07g00131 . . Cpe10g00122 Bhi03g00010 . . . Hepe04g1949 . . Cla01g02351 Cam01g2468 Cec04g2114 Cco04g2193 Clacu01g2487 Cmu01g2353 Cre04g2020 . Cone5ag1630 Cone6ag0933 Cone9ag0936 Lsi01g00205 Csa06g03736 Chy12g00045 Cme08g00190 . Blo14g00862 . . . . . . . Cmo03g01352 . Cma13g00575 . Car13g00458 . Cpe19g01096 Cpe20g00485 . . . . . . . Cla03g00684 Cam03g0710 Cec03g0683 Cco03g0720 Clacu03g0731 Cmu03g1323 Cre03g0993 Lsi02g00845 Csa01g02284 Chy02g00197 Cme12g01251
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo20g00279 . 49 287 MADS-box Gene Family AT3G58780 66.4 1.6e-78 290.0
Cmo03g01352 CCT 7 229 MADS-box Gene Family AT3G58780 64.4 2.4e-74 276.2
Cmo13g00604 CCT 789 907 MADS-box Gene Family AT3G58780 74.8 8.2e-46 181.4
Cmo01g00877 . 1 134 MADS-box Gene Family AT3G58780 50.8 8.8e-40 161.4
Cmo13g01103 . 1 236 MADS-box Gene Family AT1G26310 57.3 2.6e-68 256.1
Cmo18g00019 . 1 204 MADS-box Gene Family AT1G26310 64.1 2.5e-66 249.6
Cmo12g00088 . 1 172 MADS-box Gene Family AT1G26310 61.8 2.3e-56 216.5
Cmo01g00455 CST 62 219 MADS-box Gene Family AT1G26310 66.0 1.0e-51 201.1
Cmo14g01180 CST 1 144 MADS-box Gene Family AT1G26310 69.7 8.5e-51 198.0
Cmo01g00454 CST 1 196 MADS-box Gene Family AT1G26310 52.2 7.7e-44 174.9
Cmo12g00087 . 1 173 MADS-box Gene Family AT1G26310 54.5 1.1e-42 171.0
Cmo18g00020 . 1 175 MADS-box Gene Family AT1G26310 56.3 1.9e-42 170.2
Cmo08g00911 . 1 158 MADS-box Gene Family AT1G26310 58.5 5.5e-42 168.7
Cmo03g01352 CCT 9 184 MADS-box Gene Family AT4G09960 74.4 1.7e-66 250.0
Cmo20g00279 . 55 234 MADS-box Gene Family AT4G09960 70.0 1.4e-63 240.4
Cmo01g00877 . 1 143 MADS-box Gene Family AT4G09960 55.6 6.1e-48 188.3
Cmo13g00604 CCT 800 907 MADS-box Gene Family AT4G09960 79.6 7.7e-43 171.4
Cmo08g00911 . 1 218 MADS-box Gene Family AT3G61120 57.1 2.0e-57 219.9
Cmo17g01377 . 1 170 MADS-box Gene Family AT3G61120 55.8 2.0e-41 166.8
Cmo08g00175 . 1 170 MADS-box Gene Family AT3G61120 55.8 2.6e-41 166.4
Cmo12g00087 . 1 173 MADS-box Gene Family AT3G61120 52.0 3.5e-38 156.0
Cmo18g00020 . 1 175 MADS-box Gene Family AT3G61120 52.0 6.1e-38 155.2
Cmo13g01103 . 1 168 MADS-box Gene Family AT3G61120 51.5 2.3e-37 153.3
Cmo18g00019 . 1 168 MADS-box Gene Family AT3G61120 50.9 6.7e-37 151.8
Cmo15g01250 CCT,CST 1 208 MADS-box Gene Family AT4G11880 60.3 8.4e-55 211.1
Cmo08g00912 CCT,ECH 1 215 MADS-box Gene Family AT4G11880 54.2 3.1e-49 192.6
Cmo02g01534 CCT,CST 1 197 MADS-box Gene Family AT4G11880 53.7 3.4e-48 189.1
Cmo06g01143 CCT,ECH 25 234 MADS-box Gene Family AT4G11880 53.0 2.9e-47 186.0
Cmo14g02060 . 1 171 MADS-box Gene Family AT4G11880 59.7 1.9e-43 173.3
Cmo18g00020 . 1 174 MADS-box Gene Family AT4G11880 50.6 7.9e-37 151.4
Cmo01g00251 . 1 235 MADS-box Gene Family AT5G13790 52.8 1.1e-51 201.1
Cmo16g00301 . 1 155 MADS-box Gene Family AT2G22630 66.5 1.1e-52 204.1
Cmo15g01250 CCT,CST 1 208 MADS-box Gene Family AT4G22950 61.8 4.7e-58 221.9
Cmo08g00912 CCT,ECH 1 215 MADS-box Gene Family AT4G22950 55.6 3.9e-52 202.2
Cmo02g01534 CCT,CST 1 202 MADS-box Gene Family AT4G22950 54.4 1.9e-51 199.9
Cmo06g01143 CCT,ECH 25 234 MADS-box Gene Family AT4G22950 53.3 9.6e-51 197.6
Cmo14g02060 . 1 171 MADS-box Gene Family AT4G22950 59.6 2.1e-45 179.9
Cmo01g00454 CST 1 246 MADS-box Gene Family AT5G15800 72.2 8.9e-96 347.4
Cmo14g01181 CST 1 303 MADS-box Gene Family AT5G15800 60.0 2.8e-89 325.9
Cmo08g00175 . 1 241 MADS-box Gene Family AT5G15800 59.8 2.1e-73 273.1
Cmo17g01377 . 1 241 MADS-box Gene Family AT5G15800 58.0 2.2e-70 263.1
Cmo18g00020 . 1 262 MADS-box Gene Family AT5G15800 51.4 3.0e-59 226.1
Cmo12g00087 . 1 188 MADS-box Gene Family AT5G15800 60.2 1.4e-53 207.2
Cmo08g00911 . 1 170 MADS-box Gene Family AT5G15800 63.0 9.7e-50 194.5
Cmo18g00019 . 1 174 MADS-box Gene Family AT5G15800 54.0 2.0e-42 170.2
Cmo13g01103 . 1 172 MADS-box Gene Family AT5G15800 54.7 2.0e-42 170.2
Cmo01g00455 CST 62 219 MADS-box Gene Family AT5G15800 53.8 1.7e-38 157.1
Cmo08g00912 CCT,ECH 1 161 MADS-box Gene Family AT2G45660 70.2 2.5e-53 205.7
Cmo14g02060 . 1 159 MADS-box Gene Family AT2G45660 67.3 1.2e-50 196.8
Cmo15g01250 CCT,CST 1 159 MADS-box Gene Family AT2G45660 64.2 9.3e-48 187.2
Cmo06g01143 CCT,ECH 25 181 MADS-box Gene Family AT2G45660 64.6 3.0e-46 182.2
Cmo02g01534 CCT,CST 1 154 MADS-box Gene Family AT2G45660 63.0 1.1e-45 180.3
Cmo02g01041 CST 1 174 MADS-box Gene Family AT2G45660 55.7 1.2e-39 160.2
Cmo16g00301 . 1 156 MADS-box Gene Family AT4G37940 67.3 1.4e-54 210.3
Cmo03g00892 . 1 108 MADS-box Gene Family AT4G37940 71.3 1.3e-36 150.6
Cmo03g00881 . 1 227 MADS-box Gene Family AT2G22540 63.6 9.1e-71 264.2
Cmo07g00576 . 1 156 MADS-box Gene Family AT2G22540 78.8 7.7e-62 234.6
Cmo12g00151 . 1 223 MADS-box Gene Family AT2G22540 56.1 9.8e-57 217.6
Cmo07g01235 . 1 153 MADS-box Gene Family AT2G22540 59.0 1.3e-40 164.1
Cmo03g00881 . 1 224 MADS-box Gene Family AT4G24540 56.9 1.4e-57 220.3
Cmo12g00151 . 1 223 MADS-box Gene Family AT4G24540 54.2 5.4e-54 208.4
Cmo07g00576 . 1 156 MADS-box Gene Family AT4G24540 65.6 9.0e-49 191.0
Cmo01g00454 CST 1 171 MADS-box Gene Family AT2G03710 66.9 3.4e-57 218.8
Cmo12g00087 . 1 171 MADS-box Gene Family AT2G03710 63.4 3.5e-54 208.8
Cmo08g00175 . 1 176 MADS-box Gene Family AT2G03710 63.8 4.6e-54 208.4
Cmo17g01377 . 1 176 MADS-box Gene Family AT2G03710 62.7 3.0e-53 205.7
Cmo18g00020 . 1 173 MADS-box Gene Family AT2G03710 61.6 2.4e-50 196.1
Cmo14g01181 CST 1 228 MADS-box Gene Family AT2G03710 50.2 2.0e-49 193.0
Cmo08g00911 . 1 169 MADS-box Gene Family AT2G03710 54.7 3.7e-43 172.2
Cmo01g00454 CST 1 170 MADS-box Gene Family AT3G02310 84.8 2.3e-75 279.3
Cmo14g01181 CST 1 227 MADS-box Gene Family AT3G02310 64.5 3.5e-68 255.4
Cmo08g00175 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.8e-67 253.1
Cmo17g01377 . 1 172 MADS-box Gene Family AT3G02310 77.9 2.3e-67 252.7
Cmo18g00020 . 1 172 MADS-box Gene Family AT3G02310 64.0 2.2e-54 209.5
Cmo12g00087 . 1 170 MADS-box Gene Family AT3G02310 63.7 1.8e-51 199.9
Cmo08g00911 . 1 168 MADS-box Gene Family AT3G02310 62.6 8.2e-49 191.0
Cmo13g01103 . 1 171 MADS-box Gene Family AT3G02310 55.6 2.5e-42 169.5
Cmo18g00019 . 1 171 MADS-box Gene Family AT3G02310 54.4 1.6e-41 166.8
Cmo01g00455 CST 62 219 MADS-box Gene Family AT3G02310 54.4 5.9e-39 158.3
Cmo15g01250 CCT,CST 1 154 MADS-box Gene Family AT5G62165 61.7 1.4e-43 173.3
Cmo02g01041 CST 1 158 MADS-box Gene Family AT5G62165 58.2 1.8e-43 172.9
Cmo08g00912 CCT,ECH 1 153 MADS-box Gene Family AT5G62165 56.9 2.2e-41 166.0
Cmo14g02060 . 1 146 MADS-box Gene Family AT5G62165 61.0 6.3e-41 164.5
Cmo02g01534 CCT,CST 1 147 MADS-box Gene Family AT5G62165 58.5 6.9e-40 161.0
Cmo06g01143 CCT,ECH 25 165 MADS-box Gene Family AT5G62165 58.0 1.4e-37 153.3
Cmo16g00301 . 1 142 MADS-box Gene Family AT2G14210 76.2 1.1e-55 214.2
Cmo20g00279 . 49 287 MADS-box Gene Family AT2G42830 64.0 5.9e-73 271.6
Cmo03g01352 CCT 7 229 MADS-box Gene Family AT2G42830 63.1 1.5e-68 256.9
Cmo13g00604 CCT 800 907 MADS-box Gene Family AT2G42830 81.5 8.0e-46 181.4
Cmo01g00877 . 1 113 MADS-box Gene Family AT2G42830 56.5 4.6e-41 165.6
Cmo08g00911 . 1 218 MADS-box Gene Family AT2G45650 64.9 5.4e-74 275.0
Cmo18g00020 . 1 187 MADS-box Gene Family AT2G45650 51.3 3.5e-41 166.0
Cmo01g00455 CST 62 219 MADS-box Gene Family AT2G45650 50.6 9.0e-37 151.4
Cmo13g01103 . 63 216 MADS-box Gene Family AT1G69120 57.9 7.2e-42 167.9
Cmo18g00019 . 63 202 MADS-box Gene Family AT1G69120 61.4 1.1e-39 160.6
Cmo15g01250 CCT,CST 1 147 MADS-box Gene Family AT5G51870 55.1 1.1e-37 154.1
Cmo18g00019 . 1 231 MADS-box Gene Family AT3G30260 53.9 1.1e-55 214.2
Cmo13g01103 . 1 182 MADS-box Gene Family AT3G30260 60.4 4.9e-51 198.7
Cmo01g00455 CST 62 219 MADS-box Gene Family AT3G30260 61.0 1.5e-44 177.2
Cmo14g01180 CST 1 144 MADS-box Gene Family AT3G30260 62.8 1.1e-42 171.0
Cmo12g00088 . 1 160 MADS-box Gene Family AT3G30260 57.5 3.9e-40 162.5
Cmo18g00019 . 63 232 MADS-box Gene Family AT5G60910 54.7 5.6e-41 164.9
Cmo13g01103 . 63 242 MADS-box Gene Family AT5G60910 52.2 2.1e-40 162.9
Cmo08g00175 . 1 242 MADS-box Gene Family AT1G24260 73.3 4.7e-88 321.6
Cmo17g01377 . 1 242 MADS-box Gene Family AT1G24260 70.9 2.4e-84 309.3
Cmo01g00454 CST 1 245 MADS-box Gene Family AT1G24260 60.8 1.2e-70 263.8
Cmo08g00911 . 1 218 MADS-box Gene Family AT1G24260 54.0 1.6e-48 190.3
Cmo12g00087 . 1 156 MADS-box Gene Family AT1G24260 62.5 7.7e-46 181.4
Cmo01g00455 CST 62 222 MADS-box Gene Family AT1G24260 53.4 4.8e-40 162.2
Cmo18g00019 . 1 157 MADS-box Gene Family AT1G24260 54.3 4.8e-40 162.2
Cmo14g01180 CST 1 162 MADS-box Gene Family AT1G24260 54.9 2.4e-39 159.8
Cmo09g00122 CST 1 245 MADS-box Gene Family AT3G54340 57.8 1.7e-69 260.0
Cmo01g02003 CST 1 231 MADS-box Gene Family AT3G54340 59.5 4.1e-68 255.4
Cmo01g01418 CST 1 139 MADS-box Gene Family AT5G20240 71.9 1.1e-53 206.8
Cmo09g00760 CST 1 139 MADS-box Gene Family AT5G20240 70.5 3.5e-52 201.8
Cmo01g01418 CST 1 139 MADS-box Gene Family AT5G20240 71.9 1.1e-53 206.8
Cmo09g00760 CST 1 139 MADS-box Gene Family AT5G20240 70.5 3.5e-52 201.8
Cmo09g00122 CST 1 245 MADS-box Gene Family AT3G54340 57.8 1.7e-69 260.0
Cmo01g02003 CST 1 231 MADS-box Gene Family AT3G54340 59.5 4.1e-68 255.4
Cmo20g00279 . 49 287 MADS-box Gene Family AT3G58780 66.4 1.6e-78 290.0
Cmo03g01352 CCT 7 229 MADS-box Gene Family AT3G58780 64.4 2.4e-74 276.2
Cmo13g00604 CCT 789 907 MADS-box Gene Family AT3G58780 74.8 8.2e-46 181.4
Cmo01g00877 . 1 134 MADS-box Gene Family AT3G58780 50.8 8.8e-40 161.4
Cmo01g00454 CST 1 246 MADS-box Gene Family AT5G15800 72.2 8.9e-96 347.4
Cmo14g01181 CST 1 303 MADS-box Gene Family AT5G15800 60.0 2.8e-89 325.9
Cmo08g00175 . 1 241 MADS-box Gene Family AT5G15800 59.8 2.1e-73 273.1
Cmo17g01377 . 1 241 MADS-box Gene Family AT5G15800 58.0 2.2e-70 263.1
Cmo18g00020 . 1 262 MADS-box Gene Family AT5G15800 51.4 3.0e-59 226.1
Cmo12g00087 . 1 188 MADS-box Gene Family AT5G15800 60.2 1.4e-53 207.2
Cmo08g00911 . 1 170 MADS-box Gene Family AT5G15800 63.0 9.7e-50 194.5
Cmo18g00019 . 1 174 MADS-box Gene Family AT5G15800 54.0 2.0e-42 170.2
Cmo13g01103 . 1 172 MADS-box Gene Family AT5G15800 54.7 2.0e-42 170.2
Cmo01g00455 CST 62 219 MADS-box Gene Family AT5G15800 53.8 1.7e-38 157.1
Cmo01g00454 CST 1 171 MADS-box Gene Family AT2G03710 66.9 3.4e-57 218.8
Cmo12g00087 . 1 171 MADS-box Gene Family AT2G03710 63.4 3.5e-54 208.8
Cmo08g00175 . 1 176 MADS-box Gene Family AT2G03710 63.8 4.6e-54 208.4
Cmo17g01377 . 1 176 MADS-box Gene Family AT2G03710 62.7 3.0e-53 205.7
Cmo18g00020 . 1 173 MADS-box Gene Family AT2G03710 61.6 2.4e-50 196.1
Cmo14g01181 CST 1 228 MADS-box Gene Family AT2G03710 50.2 2.0e-49 193.0
Cmo08g00911 . 1 169 MADS-box Gene Family AT2G03710 54.7 3.7e-43 172.2
Cmo01g00454 CST 1 170 MADS-box Gene Family AT3G02310 84.8 2.3e-75 279.3
Cmo14g01181 CST 1 227 MADS-box Gene Family AT3G02310 64.5 3.5e-68 255.4
Cmo08g00175 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.8e-67 253.1
Cmo17g01377 . 1 172 MADS-box Gene Family AT3G02310 77.9 2.3e-67 252.7
Cmo18g00020 . 1 172 MADS-box Gene Family AT3G02310 64.0 2.2e-54 209.5
Cmo12g00087 . 1 170 MADS-box Gene Family AT3G02310 63.7 1.8e-51 199.9
Cmo08g00911 . 1 168 MADS-box Gene Family AT3G02310 62.6 8.2e-49 191.0
Cmo13g01103 . 1 171 MADS-box Gene Family AT3G02310 55.6 2.5e-42 169.5
Cmo18g00019 . 1 171 MADS-box Gene Family AT3G02310 54.4 1.6e-41 166.8
Cmo01g00455 CST 62 219 MADS-box Gene Family AT3G02310 54.4 5.9e-39 158.3
Cmo20g00279 . 49 287 MADS-box Gene Family AT2G42830 64.0 5.9e-73 271.6
Cmo03g01352 CCT 7 229 MADS-box Gene Family AT2G42830 63.1 1.5e-68 256.9
Cmo13g00604 CCT 800 907 MADS-box Gene Family AT2G42830 81.5 8.0e-46 181.4
Cmo01g00877 . 1 113 MADS-box Gene Family AT2G42830 56.5 4.6e-41 165.6
Cmo08g00911 . 1 218 MADS-box Gene Family AT2G45650 64.9 5.4e-74 275.0
Cmo18g00020 . 1 187 MADS-box Gene Family AT2G45650 51.3 3.5e-41 166.0
Cmo01g00455 CST 62 219 MADS-box Gene Family AT2G45650 50.6 9.0e-37 151.4
Cmo13g01103 . 63 216 MADS-box Gene Family AT1G69120 57.9 7.2e-42 167.9
Cmo18g00019 . 63 202 MADS-box Gene Family AT1G69120 61.4 1.1e-39 160.6
Cmo18g00019 . 63 232 MADS-box Gene Family AT5G60910 54.7 5.6e-41 164.9
Cmo13g01103 . 63 242 MADS-box Gene Family AT5G60910 52.2 2.1e-40 162.9
Cmo08g00175 . 1 242 MADS-box Gene Family AT1G24260 73.3 4.7e-88 321.6
Cmo17g01377 . 1 242 MADS-box Gene Family AT1G24260 70.9 2.4e-84 309.3
Cmo01g00454 CST 1 245 MADS-box Gene Family AT1G24260 60.8 1.2e-70 263.8
Cmo08g00911 . 1 218 MADS-box Gene Family AT1G24260 54.0 1.6e-48 190.3
Cmo12g00087 . 1 156 MADS-box Gene Family AT1G24260 62.5 7.7e-46 181.4
Cmo01g00455 CST 62 222 MADS-box Gene Family AT1G24260 53.4 4.8e-40 162.2
Cmo18g00019 . 1 157 MADS-box Gene Family AT1G24260 54.3 4.8e-40 162.2
Cmo14g01180 CST 1 162 MADS-box Gene Family AT1G24260 54.9 2.4e-39 159.8
Cmo13g01103 . 1 236 MADS-box Gene Family AT1G26310 57.3 2.6e-68 256.1
Cmo18g00019 . 1 204 MADS-box Gene Family AT1G26310 64.1 2.5e-66 249.6
Cmo12g00088 . 1 172 MADS-box Gene Family AT1G26310 61.8 2.3e-56 216.5
Cmo01g00455 CST 62 219 MADS-box Gene Family AT1G26310 66.0 1.0e-51 201.1
Cmo14g01180 CST 1 144 MADS-box Gene Family AT1G26310 69.7 8.5e-51 198.0
Cmo01g00454 CST 1 196 MADS-box Gene Family AT1G26310 52.2 7.7e-44 174.9
Cmo12g00087 . 1 173 MADS-box Gene Family AT1G26310 54.5 1.1e-42 171.0
Cmo18g00020 . 1 175 MADS-box Gene Family AT1G26310 56.3 1.9e-42 170.2
Cmo08g00911 . 1 158 MADS-box Gene Family AT1G26310 58.5 5.5e-42 168.7
Cmo03g01352 CCT 9 184 MADS-box Gene Family AT4G09960 74.4 1.7e-66 250.0
Cmo20g00279 . 55 234 MADS-box Gene Family AT4G09960 70.0 1.4e-63 240.4
Cmo01g00877 . 1 143 MADS-box Gene Family AT4G09960 55.6 6.1e-48 188.3
Cmo13g00604 CCT 800 907 MADS-box Gene Family AT4G09960 79.6 7.7e-43 171.4
Cmo08g00911 . 1 218 MADS-box Gene Family AT3G61120 57.1 2.0e-57 219.9
Cmo17g01377 . 1 170 MADS-box Gene Family AT3G61120 55.8 2.0e-41 166.8
Cmo08g00175 . 1 170 MADS-box Gene Family AT3G61120 55.8 2.6e-41 166.4
Cmo12g00087 . 1 173 MADS-box Gene Family AT3G61120 52.0 3.5e-38 156.0
Cmo18g00020 . 1 175 MADS-box Gene Family AT3G61120 52.0 6.1e-38 155.2
Cmo13g01103 . 1 168 MADS-box Gene Family AT3G61120 51.5 2.3e-37 153.3
Cmo18g00019 . 1 168 MADS-box Gene Family AT3G61120 50.9 6.7e-37 151.8
Cmo15g01250 CCT,CST 1 208 MADS-box Gene Family AT4G11880 60.3 8.4e-55 211.1
Cmo08g00912 CCT,ECH 1 215 MADS-box Gene Family AT4G11880 54.2 3.1e-49 192.6
Cmo02g01534 CCT,CST 1 197 MADS-box Gene Family AT4G11880 53.7 3.4e-48 189.1
Cmo06g01143 CCT,ECH 25 234 MADS-box Gene Family AT4G11880 53.0 2.9e-47 186.0
Cmo14g02060 . 1 171 MADS-box Gene Family AT4G11880 59.7 1.9e-43 173.3
Cmo18g00020 . 1 174 MADS-box Gene Family AT4G11880 50.6 7.9e-37 151.4
Cmo01g00251 . 1 235 MADS-box Gene Family AT5G13790 52.8 1.1e-51 201.1
Cmo16g00301 . 1 155 MADS-box Gene Family AT2G22630 66.5 1.1e-52 204.1
Cmo15g01250 CCT,CST 1 208 MADS-box Gene Family AT4G22950 61.8 4.7e-58 221.9
Cmo08g00912 CCT,ECH 1 215 MADS-box Gene Family AT4G22950 55.6 3.9e-52 202.2
Cmo02g01534 CCT,CST 1 202 MADS-box Gene Family AT4G22950 54.4 1.9e-51 199.9
Cmo06g01143 CCT,ECH 25 234 MADS-box Gene Family AT4G22950 53.3 9.6e-51 197.6
Cmo14g02060 . 1 171 MADS-box Gene Family AT4G22950 59.6 2.1e-45 179.9
Cmo08g00912 CCT,ECH 1 161 MADS-box Gene Family AT2G45660 70.2 2.5e-53 205.7
Cmo14g02060 . 1 159 MADS-box Gene Family AT2G45660 67.3 1.2e-50 196.8
Cmo15g01250 CCT,CST 1 159 MADS-box Gene Family AT2G45660 64.2 9.3e-48 187.2
Cmo06g01143 CCT,ECH 25 181 MADS-box Gene Family AT2G45660 64.6 3.0e-46 182.2
Cmo02g01534 CCT,CST 1 154 MADS-box Gene Family AT2G45660 63.0 1.1e-45 180.3
Cmo02g01041 CST 1 174 MADS-box Gene Family AT2G45660 55.7 1.2e-39 160.2
Cmo16g00301 . 1 156 MADS-box Gene Family AT4G37940 67.3 1.4e-54 210.3
Cmo03g00892 . 1 108 MADS-box Gene Family AT4G37940 71.3 1.3e-36 150.6
Cmo03g00881 . 1 227 MADS-box Gene Family AT2G22540 63.6 9.1e-71 264.2
Cmo07g00576 . 1 156 MADS-box Gene Family AT2G22540 78.8 7.7e-62 234.6
Cmo12g00151 . 1 223 MADS-box Gene Family AT2G22540 56.1 9.8e-57 217.6
Cmo07g01235 . 1 153 MADS-box Gene Family AT2G22540 59.0 1.3e-40 164.1
Cmo03g00881 . 1 224 MADS-box Gene Family AT4G24540 56.9 1.4e-57 220.3
Cmo12g00151 . 1 223 MADS-box Gene Family AT4G24540 54.2 5.4e-54 208.4
Cmo07g00576 . 1 156 MADS-box Gene Family AT4G24540 65.6 9.0e-49 191.0
Cmo15g01250 CCT,CST 1 154 MADS-box Gene Family AT5G62165 61.7 1.4e-43 173.3
Cmo02g01041 CST 1 158 MADS-box Gene Family AT5G62165 58.2 1.8e-43 172.9
Cmo08g00912 CCT,ECH 1 153 MADS-box Gene Family AT5G62165 56.9 2.2e-41 166.0
Cmo14g02060 . 1 146 MADS-box Gene Family AT5G62165 61.0 6.3e-41 164.5
Cmo02g01534 CCT,CST 1 147 MADS-box Gene Family AT5G62165 58.5 6.9e-40 161.0
Cmo06g01143 CCT,ECH 25 165 MADS-box Gene Family AT5G62165 58.0 1.4e-37 153.3
Cmo16g00301 . 1 142 MADS-box Gene Family AT2G14210 76.2 1.1e-55 214.2
Cmo15g01250 CCT,CST 1 147 MADS-box Gene Family AT5G51870 55.1 1.1e-37 154.1
Cmo18g00019 . 1 231 MADS-box Gene Family AT3G30260 53.9 1.1e-55 214.2
Cmo13g01103 . 1 182 MADS-box Gene Family AT3G30260 60.4 4.9e-51 198.7
Cmo01g00455 CST 62 219 MADS-box Gene Family AT3G30260 61.0 1.5e-44 177.2
Cmo14g01180 CST 1 144 MADS-box Gene Family AT3G30260 62.8 1.1e-42 171.0
Cmo12g00088 . 1 160 MADS-box Gene Family AT3G30260 57.5 3.9e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013185 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10830 PF00319 SRF-TF 1.70E-25 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00604 Cmo_Chr13 FPKM 16.766304 19.479712 23.315384 27.196415 3.534228 3.386275 2.244308 47.080509 45.549252 43.948444