Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00605 ATGATGGTGCCCAAAAGCTTCTTCGTTTTCGTTGTTCTTGCGGTGGATTGCTTCATTTTCTTCAGATTTGCAGATTCCAAGCTCCCACAAGAAGAGGTTGATGCACTACAACAAATTACGAGAACGCTAGGTGCAGTTTATTGGAAATTCAATAGTGATTCCTGTGTCGTTGAAATGTTCGGGATCACAGAAAAGCCTCCCAGGGGATCTGAGGGTAAAATTGGTTGTGATTGCAACGTCGAGAACAGCACAATTTGTCATGTCGTAAGGATAGAATTCAAGCAACACAATCTGCCCGGTGTTCTCCCACGTGAAATAGTCAAACTTCCTTTCCTGAAAGAAGTTGATTTAGCTTACAACTACCTTCATGGTAATATACCTCGGGAGTGGGCTTCAACGCGGTTGACGTCGATCTCTCTTCTTGTAAACCGGTTATCAGGGGAAATACCAGCAGAATTGGGGAATATTACTACTCTAACAGAACTGCACCTTGAAGCAAACCAATTTAGTGGTGCAATTCCATCACAGCTTGGGATGTTGAGCAACCTGCAAAGCTTGATGCTATCATCTAATCAATTGGCTGGCACGTTGCCAACAACGTTTGCGGGATTGAAAAACCTAACAAATTTCCGGATAAATGATAACAACCTCAATGGAACCATACCTGACTTCATACAAAATTGGCCGCTACTCGAAAGATTAGAACTACATGGAAGTGGACTCCAGGGACCAATTCCTGCAAAAATATCCCTTTTAAGCAACTTAAAAGAATTGAGGATCAGTGATATCAATGGGCCAATGCAGAATTTTCCTGACTTGACAAACATGACGGGCTTGGTTAGATTGGTCCTGAGAAATTGTAACATTGCTGGAGAGATTCCTTCATATGTGTGGATGGCACCAGACTTGCAAATGCTGGACCTCAGCTTTAACAAGTTGACTGGGGAAATTCCAGATGATACAAACATGGAGCGCATGAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGGAAACTACCAGAGTCAATCTTGAAGGATGGATCTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGCTTGTAGAAAGACTTTGAATATGAATCTGAACTTGTTTCGAAGTTCTTCCACCGGCAACCCCTTACAAGAAAGTCTCCCCTGCTTGAAGGATTCCATCTGTTCAAAATATTCGAAATGTTGGTTCGTAAATGCCGGTGGAAATGACTTAACTATGGAGGTAAAGAACAAAAGCGTTCTCTACAACGGGGATGCAAATGTTGATGGTGGGACAGCAAAACTCTATACGGATCATGATAGCTACTGGGGGTTGAGTAGTACTGGAGATTTCATGGACGATGACGATTTCCAAAATACGCGCTACACTTTATCGCTGCTTTCATCAAATTTGTCTGAGCTATACTCAACAGCGCGTCGGAGTCCAATTACGCTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTTAGTGACCCTTCATTTTGCAGAGCTACAATTTACAAATGATGAGACATATACAAGTCTTGGAAGGCGGAAATTCGATATCTACATTCAGGATAGGTTGGTATTGAAGAATTTTGATATTGAAGAGGAGGCTGGAGGAGCACAAAAACCAACAGAAAGGGTGTTTGCTAACGTTAGTGTAATTAATCATGTCCTGGAGATCCGATTGTATTGGGCTGGAAAAGGGACGACTAGGATTCCTCAAAGAGGAAGCTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATGTTAAATATTGTTCAATCCATGAAAGTGGTAAAACGAAAACTGTAGCCATCGTCATTGGAGTTACGGTTGGAGTATTATGTGTTGCTTCAATCGTCATATTAGGACTTCTTCGGTGGAAAAGCACCCTTAGAGCAATCAGGCGCAATAAAGGCGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACCTTGAAACAAATAAAAGCTGCAACCAATCATTTTGATTCCTGTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTGAATTGGTTGATGGTACCATTGTAGCAATTAAGCAGCTATCCTCCAAATCAAGGCAGGGAAACCGTGAATTTCTGAATGAGATAGGAATGATCTCTTGCTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGCATTGAAGGAGATCAACTGTTGTTGGTATATGAATATCTGGAAAACAATAGTCTTGCCCGAGCACTTTTCGGTCCGTCTTACAGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCGAAAGGTTTAGCATATCTCCACGAAGAATCGAGCCTCAAAATCGTTCATAGAGACATCAAAGCTACTAATGTGTTACTCGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGATGATGAGGAGAAGACTCATATCACCACCAGAGTGGCTGGGACCATAGGATATATGGCTCCCGAGTATGCGCTTTGGGGTTATCTCACCTACAAAGCAGATGTCTATAGTTTCGGAGTCGTGGCGTTGGAAATTATCAGTGGCAGAAGCAACAATGATTACGTACCAAGCGAAACTTGTGTTTGTCTTCTTGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTCATGGAGTTGGTAGATGAGAAGTTGAGGTCAGAAATCGACGGAAAACAAGCGGAAAACATGGTGAAAATAGCCCTTCTCTGCACGAATGCTTCGCCGTCAGTAAGGCCAGCAATGTCGGAAGTGGTGAACATGCTGGAAGGAAGAATGGGAATTCCAGAGCTAATCCCAGAACCCAGTAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGGGATATGCGTAAACAGCAGCAGAACCAAAGCTTGAGTGGAAGCCAGACCCAAAATTCCACACAAAATTCCACAATGAGAACATTTGGGTCTTCCTCTACTTCTGGAAATGAGTTCTATGATATCAACCCAGAGCCAAGATCATCATCATCAACCTGA 3075 42.31 MMVPKSFFVFVVLAVDCFIFFRFADSKLPQEEVDALQQITRTLGAVYWKFNSDSCVVEMFGITEKPPRGSEGKIGCDCNVENSTICHVVRIEFKQHNLPGVLPREIVKLPFLKEVDLAYNYLHGNIPREWASTRLTSISLLVNRLSGEIPAELGNITTLTELHLEANQFSGAIPSQLGMLSNLQSLMLSSNQLAGTLPTTFAGLKNLTNFRINDNNLNGTIPDFIQNWPLLERLELHGSGLQGPIPAKISLLSNLKELRISDINGPMQNFPDLTNMTGLVRLVLRNCNIAGEIPSYVWMAPDLQMLDLSFNKLTGEIPDDTNMERMRFLFLSGNMLSGKLPESILKDGSNVDLSYNNLTWQGPEQHACRKTLNMNLNLFRSSSTGNPLQESLPCLKDSICSKYSKCWFVNAGGNDLTMEVKNKSVLYNGDANVDGGTAKLYTDHDSYWGLSSTGDFMDDDDFQNTRYTLSLLSSNLSELYSTARRSPITLTYFHHCLDNGNYLVTLHFAELQFTNDETYTSLGRRKFDIYIQDRLVLKNFDIEEEAGGAQKPTERVFANVSVINHVLEIRLYWAGKGTTRIPQRGSYGPLISAISVYSDVKYCSIHESGKTKTVAIVIGVTVGVLCVASIVILGLLRWKSTLRAIRRNKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGELVDGTIVAIKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPSYSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDEKLRSEIDGKQAENMVKIALLCTNASPSVRPAMSEVVNMLEGRMGIPELIPEPSSYNEDLRFKAMRDMRKQQQNQSLSGSQTQNSTQNSTMRTFGSSSTSGNEFYDINPEPRSSSST 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6653499 6665018 - CmoCh13G006050.1 Cmo13g00605 394660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00605 1024 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 75 1000 - -
Cmo13g00605 1024 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672|GO:0006468
Cmo13g00605 1024 Gene3D - 405 601 - -
Cmo13g00605 1024 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Cmo13g00605 1024 Gene3D Phosphorylase Kinase; domain 1 640 751 - -
Cmo13g00605 1024 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 1000 - -
Cmo13g00605 1024 SUPERFAMILY L domain-like 77 394 - -
Cmo13g00605 1024 Pfam Malectin domain 406 594 IPR021720 -
Cmo13g00605 1024 SMART serkin_6 676 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00605 1024 ProSiteProfiles Protein kinase domain profile. 676 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00605 1024 SUPERFAMILY Protein kinase-like (PK-like) 659 948 IPR011009 -
Cmo13g00605 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Cmo13g00605 1024 Gene3D Ribonuclease Inhibitor 265 392 IPR032675 -
Cmo13g00605 1024 MobiDBLite consensus disorder prediction 974 1024 - -
Cmo13g00605 1024 Gene3D Ribonuclease Inhibitor 197 264 IPR032675 -
Cmo13g00605 1024 Gene3D Ribonuclease Inhibitor 46 196 IPR032675 -
Cmo13g00605 1024 Gene3D Transferase(Phosphotransferase) domain 1 752 952 - -
Cmo13g00605 1024 MobiDBLite consensus disorder prediction 976 1024 - -
Cmo13g00605 1024 CDD STKc_IRAK 682 949 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00656 Cmo-Chr9:3288325 Cmo13g00605 Cmo-Chr13:6653499 0 dispersed
Cmo13g00605 Cmo-Chr13:6653499 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo16g00411 Cmo-Chr16:1896063 Cmo13g00605 Cmo-Chr13:6653499 2.05E-76 transposed
Cmo01g01316 Cmo-Chr1:10421966 Cmo13g00605 Cmo-Chr13:6653499 0 wgd
Cmo13g00605 Cmo-Chr13:6653499 Cmo18g00416 Cmo-Chr18:2724288 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74768 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00605 - - cmax:111495536 1971.82