Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00612 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGGAGAAGGAGATCGCCGTCCTTGGAGGTATTTTTGGCCCCTGTTGACCTCTCCGATGTGGCCTTAGTTCGAACCCTGGCGGTTGTTGCGACGGAGCTCGTTTCCCGATTTTCTCAGAAATCCTTCTTCTTTCAGCGGAGGAATTCGCGATCTCTGATAAGGAAACTGGAGGTGTGTTTAGTCTTTTTGGACTGTTTGAAGGATTCCGGTGCTACTTTGCCTCACACAGCGTTGCTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCGAAGATACTCCTTGATTATTGCTCCGAATCGAGTAAGTTATGGATGTTGCTTCAGAACCACTCGATTTCGGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTTTTGAGGAAGTTGAATTAGCTGTGGATGTTAGAGAACAGGTTGAGCTCTTGCAAAAGCAATTGAGAAGGACTAGGATGTTTGTTGATGAATGCGACGAGGTGTTGAGGGCGCACTTCCTTTCGTTTCTCGACGAATTTGAGAACGGGAGGCTTCCGAATCCGAGGGAATTGAGGGAATTTTTTGTGGATAAGTTGAAGATTCGGAATGCTAAGTGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGCGACGTTGAGCCAACCTTAGCAGTGTTAAATGGTTTTGTTGCTTTTACTAGATACAGTAGATTTCTCCTCTTCGGATTTGAGGAAGATGAAGTTGATTCAGGTGCAGGGAACCAGAAGAAGCTGAAGAAGAACTTGATTAGCCAGGAGATTGCTGAGACGCTTTTAACGATTCCGAGGGACTTCTGCTGCCCGATATCACTGGATTTGATGAATGATCCGGTGATCATTTCTACAGGTCAGACATATGACCGCAGTTCGATTACTAGATGGATGGAAGAAGGGCACAGCACTTGCCCAAAGACGGGGCAATTGCTCGTTCATACCCGCCTCGCTCCCAACCGCGCGTTAAGGAATTTGATCATCCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCAGAAGGAATGGATGCATCTGCTGAAAGTTATGCAATGGCTTCTCCAACACGTGCTGCGCTCGAAGCCAACAGAGCAACAGCTATAATCCTTATTCAACAGTTATCAATCGGATCGCAAGATGCAAAGTCGATTGCTGCTCGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAATCGTGCGTTCATCGCAGAAGCCGGTGCGATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCAGTGACTGCTATGCTTAATCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAACCGAAGTGTTGAGATCTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTGTTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGAGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGACGCTGTAACAGCTTTGTTTAATCTCTCGACGCATACCGATAACTGCGTTCGGATGATAGAGGCCGGAGCAGTAACAGCGCTTGTAGTAGCATTGGGGAACGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGAGCCGAAGCAGTCGCTAAAGAGGAGAGAGCTGTGGCAGGATTAATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGAGGCGCTGCCACGACCGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGGTTGCTCCAAATGCTCCTATTTACCGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTCGAGTGTTCCAAAGATGTGAGCATGTCGTAATGCATGGGGTTGGTTATGCCTATCCAAGTAACTCGGCTTCTAACAGGGACTCCAGCTTTGCTAGCGAGGTATCTGTGCCGATATCCATCTCAGTACCGGTCGTGTAG 2136 47.57 MAAAAIFSSLRRRRSPSLEVFLAPVDLSDVALVRTLAVVATELVSRFSQKSFFFQRRNSRSLIRKLEVCLVFLDCLKDSGATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWMLLQNHSISGHFNDLNLELLTFFDVFPFEEVELAVDVREQVELLQKQLRRTRMFVDECDEVLRAHFLSFLDEFENGRLPNPRELREFFVDKLKIRNAKCCRAEIEFLEEQIVNHEGDVEPTLAVLNGFVAFTRYSRFLLFGFEEDEVDSGAGNQKKLKKNLISQEIAETLLTIPRDFCCPISLDLMNDPVIISTGQTYDRSSITRWMEEGHSTCPKTGQLLVHTRLAPNRALRNLIIQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATAIILIQQLSIGSQDAKSIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRSGHSTEARENAAATLFSLSAVHDYKKRIAEESGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVVALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEHVVMHGVGYAYPSNSASNRDSSFASEVSVPISISVPVV 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6686534 6688669 - CmoCh13G006120.1 Cmo13g00612 394667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00612 711 PANTHER U BOX DOMAIN-CONTAINING 11 688 - -
Cmo13g00612 711 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Cmo13g00612 711 Gene3D - 512 667 IPR011989 -
Cmo13g00612 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Cmo13g00612 711 Gene3D - 394 511 IPR011989 -
Cmo13g00612 711 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Cmo13g00612 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cmo13g00612 711 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 688 - -
Cmo13g00612 711 Coils Coil 212 232 - -
Cmo13g00612 711 CDD RING-Ubox_PUB 292 334 IPR045210 -
Cmo13g00612 711 SUPERFAMILY RING/U-box 277 362 - -
Cmo13g00612 711 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Cmo13g00612 711 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Cmo13g00612 711 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Cmo13g00612 711 SMART arm_5 463 504 IPR000225 GO:0005515
Cmo13g00612 711 SMART arm_5 506 546 IPR000225 GO:0005515
Cmo13g00612 711 SMART arm_5 587 627 IPR000225 GO:0005515
Cmo13g00612 711 SMART arm_5 421 461 IPR000225 GO:0005515
Cmo13g00612 711 SMART arm_5 547 585 IPR000225 GO:0005515
Cmo13g00612 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00612 Cmo18g00411 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00612 Cmo-Chr13:6686534 Cmo15g00157 Cmo-Chr15:726309 8.22E-132 dispersed
Cmo04g01808 Cmo-Chr4:9107841 Cmo13g00612 Cmo-Chr13:6686534 2.80E-66 transposed
Cmo13g00612 Cmo-Chr13:6686534 Cmo18g00411 Cmo-Chr18:2697402 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00612 - - csv:101204151 1172.53