Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00614 ATGGATGATGTTACCTTCAACAATAACCACCAATTCTATTCTGTTGATCTCTTAGAAGATAGCGACGAATTCAAGGCAGCCCCTGATTCTCCTCCTCCTCCTCCTCCTCCTCTGCCTCCTAATTCCACCGCCGCCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTGGTGTCGGTGCGGATTAATGGCGACGGCCCAAGGAATTCCTCTGGTTCTACGACTCCACCCTCTGATTCTTGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAGGGCTCCCCTTATCCCAGGGCGTATTATAGGTGTAGTAGCTCCAAGGGATGTCCGGCGAGGAAGCAAGTAGAGAGGAACCGGCTTGATCCGACCATGTTGCTCATTACTTATTCCTGCGAGCATAACCATTCCGGTCCGGTTTCCAGAAACAACAATCACCACCAAGCCGCCGCCGTGAAACCCACTTCGCCAGAGACGGTTCCGGTTCATCCAGAACCGGAGGCGGAAGAGAAATTTGTGGAGTCGTTAGAGGACCAGTTCAGCTGGTTTGGGGAAATGGAAACCACGTCGTCCACAGTGCTCGAAAGCTCCATTTTCTCGGGGAGATCATCCAGCGGAGTGGGAGATTCGATTTCCAGTGACGTGGCAATGCCTTTTCCGATGGGGGATGATGACGTGGACGACTCTCTCTTTGCGGATCTCGGGGAGTTGCCGGAGTGCTCTGTCGTGTTCCGACACGGCGGAGGCCCAGAATTACCAGTCGATGAACAACCGGCTACAAGCCAGCGGCGGATCACTCCTTGGTGCGGAGCCACCACTTGA 816 54.04 MDDVTFNNNHQFYSVDLLEDSDEFKAAPDSPPPPPPPLPPNSTAAKKGRRGMKKKVVSVRINGDGPRNSSGSTTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNHHQAAAVKPTSPETVPVHPEPEAEEKFVESLEDQFSWFGEMETTSSTVLESSIFSGRSSSGVGDSISSDVAMPFPMGDDDVDDSLFADLGELPECSVVFRHGGGPELPVDEQPATSQRRITPWCGATT 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6701906 6702968 - CmoCh13G006140.1 Cmo13g00614 394669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00614 271 Pfam WRKY DNA -binding domain 78 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00614 271 Gene3D WRKY domain 66 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo13g00614 271 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 42 269 IPR044810 GO:0003700
Cmo13g00614 271 MobiDBLite consensus disorder prediction 136 150 - -
Cmo13g00614 271 MobiDBLite consensus disorder prediction 136 165 - -
Cmo13g00614 271 SMART WRKY_cls 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00614 271 MobiDBLite consensus disorder prediction 17 84 - -
Cmo13g00614 271 MobiDBLite consensus disorder prediction 246 271 - -
Cmo13g00614 271 ProSiteProfiles WRKY domain profile. 77 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00614 271 MobiDBLite consensus disorder prediction 27 42 - -
Cmo13g00614 271 MobiDBLite consensus disorder prediction 63 80 - -
Cmo13g00614 271 PANTHER OS01G0750100 PROTEIN 42 269 - -
Cmo13g00614 271 SUPERFAMILY WRKY DNA-binding domain 73 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo13g00614 271 MobiDBLite consensus disorder prediction 257 271 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00614 Cmo18g00408 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01984 Cmo-Chr11:13623437 Cmo13g00614 Cmo-Chr13:6701906 3.44E-47 dispersed
Cmo13g00614 Cmo-Chr13:6701906 Cmo18g00508 Cmo-Chr18:3605353 1.03E-34 dispersed
Cmo13g00614 Cmo-Chr13:6701906 Cmo18g00408 Cmo-Chr18:2667866 2.08E-130 wgd
Cmo13g00614 Cmo-Chr13:6701906 Cmo19g01045 Cmo-Chr19:9102316 4.92E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10833 PF03106 WRKY 7.80E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00614 - - csv:101203902 403.675