Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00617 ATGACGGAGGCGCCGCCGAGACGACTGAGAGGCCACAAAGGCACTGCCACGTGCTGCATCGCCTCGAATGACCGTCCTGGCCTCGTCGCTACTTCAGGCGAGGATGGTTGTGTTTGCTGGTTTGACATGAGATGCAAAGATGTGGTATCCATTATGGAAGTAGGAAAAGAACCTATTACATCCATATGTTTCAAGCAAGGGAATGAAGATGTTATCTACATCTCCTCTGGGAAGGAAATTAAGTCATTTGATGTCCATCAGGTTTCTTGTAGCCCAAAATCTTCTTTTCTGGCTGCTGCCGATGATGGCGGTGATGTTAAGATCATTGATATTCACCAGAATTGCCTATACAAAACATTAAGATCTGGCCATACAAGTATCTGTAGCAGTGTTCAGTTCCTTCCTTGGAGACCTTGGGAAGTTATTACGGGAGGTCTTGATTCAAAGCTCATTATGTGGGACTTTTCAAGAGGACGTCCCATCAAAGTTCTTGATTTTGACATCCCTGACAACAACCCTTCCAGTAACACAGGGCAATGTTTTAATCCTGCATTTATTCATGCAATAGTAGTTCCTGAAGTTAATATGGTGGACAGATTGGGCCAGATATGTGTGGTTGCAAGGGGTGATGGTGTTGTTCATGTGATTGATATTGAATCCGAGAAATCAAAGATTTCCACAAAAACTAGTAAAAGAACACAAACTAGATCTAAGGGAGTTACAGCAGCTTGCGATGGGGATAACCAAGAGCAAAGTGGAAGAAAGAGCATGACGGATCTCCCTTACCAAGTGGAAAATTTCAGGGCATTTTCTCGATTTGGGGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAAATGCGTAAAGCTATGGAATTGGTCTGGAGTTCCTGATGCTGGGGAAGCTGGCAGCAGCAACAACAACAAAATTCTTCATTTGAACATCGACCTGAACAAAAAGGTGAATTGGCTATGTACTACTCCATCTGACACAGAAAACCTTGTGGTCTGTGATACCAGCAAGGAGGACCTGATCATCTCCCCGCCCATCTCCATATTATCAGCACTCTTCTCGGAAAAGTTGCCCTTTGGATTCAACCCCCAACAGCTCTCATCTTTTCCATGGCTCATTCAACGGGTTGCAGAATCACGGGTGTCCGAAGAAAGGGCAATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCCAGTCGGTGTTGATGCCAATGGAGAGGCATTCGTCGCCTGCCATGAGTGCCATTTTCCTATTTGCAGAGTCTGCGTTCAGTATGATATTAAGGAAGGCAGAAATGTTTGCTTGCGTTGTGGGTCTCCATTTGACGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATGAAAACACAACGGCATCTCATCTCAGTCATTCACAGGACGTTGGAGTTCACGCTAGACATATCAGCAGTGTGTCAACAGTGGATAGTGAATTGAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAAAGGCCTACCGTGAAGACTGAACAGGAAGCTCAAATTCCTCCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGACGGCTGCGGTTACACACACATTTTCTTCAGTTTATCCAATTCCATCCAGTAGATTAACACCATACAGAATTGTGATAATCATGAGATTGATCATTCTAGCTCTTTTCTTCCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTTACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCATGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTGTGCAGAGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAATCTCTTGTTGAGACAGCCGACTTTGCAAGAAAGTGGGTTCCATTCTGCAAGAAATTTTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTTCATGCAAGATGGAACAGCTTGGCCTGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGCAATACTGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCCAGAGAGAAAAGGCCTGGTTACCAACATCACAAAAAAGCCGGCGCTGAAAATGCTCTGGTAAGAGTATCTGCAGTCCTCACAAACGCCCCCTTCATTCTCAATCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTAATGGACCCACAAGTAGGCCGAGATGTATGCTACGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCTAATCGCAACACAGTTTTCTTTGATGTCAACATGAAAGGATTGGATGGCATCCAGGGACCAGTTTACGTGGGTACAGGTTGTGTTTTTAATAGACAGGCTCTTTATGGCTACGGACCTCCTACTATGCCTAGCTTATCTAAGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGTGCGTGCTGTTGTCCTTCCAAGAAGATATCAAAAGACCCGACTGAGATTCAGAGAGATGTAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTACGAGAGGTCCATGCTAATTTCTCAATTGAGTTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCGACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATTCATCGATTTTGATCAAAGAAGCAATTCATATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCCATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTTGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCCTTCACCTCCCTCCCTCTCGTTGCGTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGTCTTTGGTAATGCCCAAATTGAATTGTGTTGCTCCTGCTGCACTTTTGGGACTGTATTATAGTGAAAATCCTTCTGTATGTCTTCTCCTCATTTTTTTGCTAAACATCATGCAGCTCTCAAACCTAGCAAGTACTCTTTTTCTGGGTCTCTTCTTGTCCATCATTCTCACAAGTGTTCTTGAGCTGCGTTGGAGTGGTGTTAGCATCGAAGATCTATGGCGTAATGAGCAATTCTGGGTCATCGGAGGCGTCTCGGCCCATCTCTTTGCTGTTTTCCAAGGATTCCTAAAGATGTTAGCTGGTGTGGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGACGCCGAGTTTGGAGAGCTATACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTTATTGTTGTTAACATGGTCGGTGTCATTGCTGGATTTTCCGATGCACTAAATGGTGGATATGAAGCCTGGGGACCTCTTTTTGGCAAGGTATTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCTGTACTGTTGGCATCAGTTTTCTCACTTGTCTGGGTGAAGATAAACCCATTTGTGAACCAAATTGACAGCACAACCGTTGCACAAAGCTGCATTGCCATAGATTGTTGA 4194 43.87 MTEAPPRRLRGHKGTATCCIASNDRPGLVATSGEDGCVCWFDMRCKDVVSIMEVGKEPITSICFKQGNEDVIYISSGKEIKSFDVHQVSCSPKSSFLAAADDGGDVKIIDIHQNCLYKTLRSGHTSICSSVQFLPWRPWEVITGGLDSKLIMWDFSRGRPIKVLDFDIPDNNPSSNTGQCFNPAFIHAIVVPEVNMVDRLGQICVVARGDGVVHVIDIESEKSKISTKTSKRTQTRSKGVTAACDGDNQEQSGRKSMTDLPYQVENFRAFSRFGEKGKFIVSGGNDKCVKLWNWSGVPDAGEAGSSNNNKILHLNIDLNKKVNWLCTTPSDTENLVVCDTSKEDLIISPPISILSALFSEKLPFGFNPQQLSSFPWLIQRVAESRVSEERAMMVSDVPICHTCGEPVGVDANGEAFVACHECHFPICRVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDENTTASHLSHSQDVGVHARHISSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAQIPPQQQMEEKQISETAAVTHTFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWFMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTMPSLSKTSSSSCSWCGCCACCCPSKKISKDPTEIQRDVKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANSSILIKEAIHIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTSLVMPKLNCVAPAALLGLYYSENPSVCLLLIFLLNIMQLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVIAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQIDSTTVAQSCIAIDC 1397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6712859 6724931 + CmoCh13G006170.1 Cmo13g00617 394672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00617 1397 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 393 1183 - -
Cmo13g00617 1397 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 393 1183 - -
Cmo13g00617 1397 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 1182 1397 - -
Cmo13g00617 1397 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1182 1397 - -
Cmo13g00617 1397 SUPERFAMILY WD40 repeat-like 5 338 IPR036322 GO:0005515
Cmo13g00617 1397 Pfam Zinc-binding RING-finger 397 450 IPR027934 -
Cmo13g00617 1397 ProSitePatterns Trp-Asp (WD) repeats signature. 141 155 IPR019775 -
Cmo13g00617 1397 SMART WD40_4 227 293 IPR001680 GO:0005515
Cmo13g00617 1397 SMART WD40_4 113 154 IPR001680 GO:0005515
Cmo13g00617 1397 SMART WD40_4 2 42 IPR001680 GO:0005515
Cmo13g00617 1397 SMART WD40_4 76 110 IPR001680 GO:0005515
Cmo13g00617 1397 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 943 972 IPR017896 -
Cmo13g00617 1397 SUPERFAMILY Nucleotide-diphospho-sugar transferases 660 1139 IPR029044 -
Cmo13g00617 1397 Gene3D - 1 85 IPR015943 GO:0005515
Cmo13g00617 1397 Gene3D - 86 348 IPR015943 GO:0005515
Cmo13g00617 1397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 473 IPR013083 -
Cmo13g00617 1397 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 293 IPR001680 GO:0005515
Cmo13g00617 1397 MobiDBLite consensus disorder prediction 510 537 - -
Cmo13g00617 1397 MobiDBLite consensus disorder prediction 230 255 - -
Cmo13g00617 1397 MobiDBLite consensus disorder prediction 227 255 - -
Cmo13g00617 1397 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 163 IPR001680 GO:0005515
Cmo13g00617 1397 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 798 939 IPR029044 -
Cmo13g00617 1397 Pfam Cellulose synthase 646 1164 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo13g00617 1397 Pfam Cellulose synthase 1181 1387 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo13g00617 1397 SUPERFAMILY RING/U-box 389 465 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00617 Cmo18g00405 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00617 Cmo-Chr13:6712859 Cmo17g01333 Cmo-Chr17:10447348 0 dispersed
Cmo13g00617 Cmo-Chr13:6712859 Cmo18g00405 Cmo-Chr18:2623298 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00617 K10999 - csv:101208988 2423.28