Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00625 ATGGAGAAGAAGAGTTCCATTTTAATGCAAAGGTACGAGCTTGGGAGGATGCTTGGGCAGGGCACTTTTGCCAAAGTCTACCATGCTCGTAACCTTAAGTCAGGCCAGAGCGTGGCCATCAAGGTCATTAATAAAGAGAAAGTGATGCGTGTTGGGTTGATCGACCAAATCAAGAGGGAAATCTCTGTGATGCGCCTTGTTCGCCATCCCAATGTAGTGCAGCTTTACGAGGTCATGGCTAGCCGGACCAAGATCTATTTTGCCATGGAGTATGTCAAAGGTGGGGAGCTTTTTGATAAGGTGGCTGAAGGCAAGCTCAGGGAAGACGCTGCTCGTAAGTACTTTCAGCAGCTAATTGGCGCTGTTGATTATTGCCATAGCCGTGGCGTCTACCATAGAGATATCAAGCCTGAAAATCTCCTTCTTGATGAGTTTGGGAATCTCAAGATTTCTGATTTTGGGTTGAGTGCTTTGGCTGAGTCTAGGCGGCAAGATGGGCTTCTTCATACCACTTGCGGCACCCCTGCCTATGTCGCCCCTGAAGTCATCAACAAGAAAGGGTACGATGGAGCTAAAGCTGACATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTGGCGGGTTATCTCCCTTTCCACGACCCAAATCTAATGGAAATGTACAGAAAAATCTCGAGAGGAGAATTCAAATGCCCTCACTGGTTTCCCCCAGAAGTTCGCAAGCTGCTCTCAAGAATCCTAGACCCAAATCCACAAACCAGAATAAAAATGGCCAAACTAATGGAAAATTCATGGTTCAAAAAGGGTTTCAGCGCAAATGTAGCAACTCCAAAGCCGCTTCAAATCAACGGAAACATGTCGGGTGTGAGCGACGTCCACATCGATTTCGACGACAGCAGCTCGGAGGAAGGCTCTGTTAGTACCAGCAACGAGAGTGGAACACCACCAGCAGGCAGAACCCCAAGGAGAAACCATTCCTTCAATGCATTCGACATCATATCTCTGTCGCCAGGTTTTGATCTGTCGGGTCTGTTCGAGAGCGACGTGAATGAGAGGCCGCAGTCACGTTTCACGACAACGAAGCCAGAGTCGGCGATCGTGTCGAAGTTTGAAGAGATAGCAGAAATGGAAAGGTTCAAGGTGATGAAGAAAGATGGGTTAGTGAAACTGCAGGGGAGCAAACAGGGGAGAAAAGGACAATTGGCTATAGACGCAGAGATATTTGAAGTGACGCCTTCATTTTTTGTGGTGGAGGTGACGAAAACAGCAGGGGACACATTGGAATACAGGAAATTTTACGACAAAGACATGAGGCCTTGCCTTAAGGACATTGTGTGGACTTGGGAAGGAAATGAACAACCAACCACATAA 1371 47.48 MEKKSSILMQRYELGRMLGQGTFAKVYHARNLKSGQSVAIKVINKEKVMRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFDKVAEGKLREDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFKCPHWFPPEVRKLLSRILDPNPQTRIKMAKLMENSWFKKGFSANVATPKPLQINGNMSGVSDVHIDFDDSSSEEGSVSTSNESGTPPAGRTPRRNHSFNAFDIISLSPGFDLSGLFESDVNERPQSRFTTTKPESAIVSKFEEIAEMERFKVMKKDGLVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVTKTAGDTLEYRKFYDKDMRPCLKDIVWTWEGNEQPTT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6757756 6759289 - CmoCh13G006250.1 Cmo13g00625 394680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00625 456 SUPERFAMILY Protein kinase-like (PK-like) 8 331 IPR011009 -
Cmo13g00625 456 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Cmo13g00625 456 Gene3D Transferase(Phosphotransferase) domain 1 2 311 - -
Cmo13g00625 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cmo13g00625 456 MobiDBLite consensus disorder prediction 293 324 - -
Cmo13g00625 456 PANTHER - 2 454 - -
Cmo13g00625 456 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00625 456 MobiDBLite consensus disorder prediction 301 324 - -
Cmo13g00625 456 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cmo13g00625 456 Pfam NAF domain 326 383 IPR004041 GO:0007165
Cmo13g00625 456 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00625 456 CDD CIPK_C 328 442 - -
Cmo13g00625 456 Gene3D Kinase associated domain 1, KA1 322 447 - -
Cmo13g00625 456 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00625 456 CDD STKc_SnRK3 11 265 - -
Cmo13g00625 456 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 454 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00625 Cmo18g00399 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00316 Cmo-Chr3:4336478 Cmo13g00625 Cmo-Chr13:6757756 0 dispersed
Cmo07g01272 Cmo-Chr7:6994481 Cmo13g00625 Cmo-Chr13:6757756 0 dispersed
Cmo09g00419 Cmo-Chr9:1843227 Cmo13g00625 Cmo-Chr13:6757756 4.87E-178 dispersed
Cmo12g01173 Cmo-Chr12:10616139 Cmo13g00625 Cmo-Chr13:6757756 0 dispersed
Cmo13g00625 Cmo-Chr13:6757756 Cmo18g00399 Cmo-Chr18:2594858 0 wgd
Cmo13g00625 Cmo-Chr13:6757756 Cmo03g01327 Cmo-Chr3:9900418 0 wgd
Cmo13g00625 Cmo-Chr13:6757756 Cmo07g00176 Cmo-Chr7:930218 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74770 PF00069 Pkinase 6.90E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00625 K07198 - csv:101206082 804.668