Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00632 | ATGATGATGGCAGAGAGAAAGAAGAACGATGAAGATCATGAGGGAGGAATTAAGCTGTTTGGGGCCACTATTATGTTGCACGACAACCGGATACTTAAAGAAGAGCCCAACGTTTCAGATCAACAATCGCCAGAAAAAAGGCCTGACAAGATCATCCCCTGTCCGAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAACCACGCCATTTCTGTAAGGGCTGCCAGAGGTACTGGACCGCCGGTGGGGCCCTCCGTAATGTCCCTGTTGGAGCCGGCCGCCGAAAAACCAAACCCCCTTGCCAGACTTTTGGTGGGTTGCCGGAAAATTGCGTCTTTGATTCTTCAGGGATCGTGGCGGTGCAGCCGTTTGAGTTGGAAGGGATGGTTGAGGAGTGGCATGTCGTCGCTGCAGCTGCACAGGATGGGTTCCGGCAAATTTTACCGGTAAAGCGACGGAGGGGTTACCAAGACGGTCAAATCTGTTGA | 510 | 50.0 | MMMAERKKNDEDHEGGIKLFGATIMLHDNRILKEEPNVSDQQSPEKRPDKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAAAAQDGFRQILPVKRRRGYQDGQIC | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6799304 | 6799813 | + | CmoCh13G006320.1 | Cmo13g00632 | 394687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00632 | 169 | PANTHER | CYCLIC DOF FACTOR 2 | 12 | 161 | IPR045174 | GO:0003700|GO:0006355 | |
Cmo13g00632 | 169 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.5-LIKE | 12 | 161 | - | - | |
Cmo13g00632 | 169 | Pfam | Dof domain, zinc finger | 50 | 105 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo13g00632 | 169 | ProSitePatterns | Zinc finger Dof-type signature. | 54 | 90 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo13g00632 | 169 | ProSiteProfiles | Zinc finger Dof-type profile. | 52 | 106 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo07g00184 | Cmo13g00632 | CCT | |
Cmo03g01322 | Cmo13g00632 | CCT | |
Cmo13g00632 | Cmo18g00391 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo13g00632 | Cmo-Chr13:6799304 | Cmo14g00534 | Cmo-Chr14:2711508 | 6.07E-38 | dispersed | |
Cmo13g00632 | Cmo-Chr13:6799304 | Cmo18g00391 | Cmo-Chr18:2529359 | 4.41E-85 | wgd | |
Cmo13g00632 | Cmo-Chr13:6799304 | Cmo03g01322 | Cmo-Chr3:9881323 | 1.10E-53 | wgd | |
Cmo13g00632 | Cmo-Chr13:6799304 | Cmo07g00184 | Cmo-Chr7:956095 | 2.13E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10835 | PF02701 | zf-Dof | 4.20E-32 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00632 | - | - | csv:101204978 | 290.812 |