Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00632 ATGATGATGGCAGAGAGAAAGAAGAACGATGAAGATCATGAGGGAGGAATTAAGCTGTTTGGGGCCACTATTATGTTGCACGACAACCGGATACTTAAAGAAGAGCCCAACGTTTCAGATCAACAATCGCCAGAAAAAAGGCCTGACAAGATCATCCCCTGTCCGAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAACCACGCCATTTCTGTAAGGGCTGCCAGAGGTACTGGACCGCCGGTGGGGCCCTCCGTAATGTCCCTGTTGGAGCCGGCCGCCGAAAAACCAAACCCCCTTGCCAGACTTTTGGTGGGTTGCCGGAAAATTGCGTCTTTGATTCTTCAGGGATCGTGGCGGTGCAGCCGTTTGAGTTGGAAGGGATGGTTGAGGAGTGGCATGTCGTCGCTGCAGCTGCACAGGATGGGTTCCGGCAAATTTTACCGGTAAAGCGACGGAGGGGTTACCAAGACGGTCAAATCTGTTGA 510 50.0 MMMAERKKNDEDHEGGIKLFGATIMLHDNRILKEEPNVSDQQSPEKRPDKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAAAAQDGFRQILPVKRRRGYQDGQIC 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6799304 6799813 + CmoCh13G006320.1 Cmo13g00632 394687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00632 169 PANTHER CYCLIC DOF FACTOR 2 12 161 IPR045174 GO:0003700|GO:0006355
Cmo13g00632 169 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 12 161 - -
Cmo13g00632 169 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677|GO:0006355
Cmo13g00632 169 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Cmo13g00632 169 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00184 Cmo13g00632 CCT
Cmo03g01322 Cmo13g00632 CCT
Cmo13g00632 Cmo18g00391 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00632 Cmo-Chr13:6799304 Cmo14g00534 Cmo-Chr14:2711508 6.07E-38 dispersed
Cmo13g00632 Cmo-Chr13:6799304 Cmo18g00391 Cmo-Chr18:2529359 4.41E-85 wgd
Cmo13g00632 Cmo-Chr13:6799304 Cmo03g01322 Cmo-Chr3:9881323 1.10E-53 wgd
Cmo13g00632 Cmo-Chr13:6799304 Cmo07g00184 Cmo-Chr7:956095 2.13E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10835 PF02701 zf-Dof 4.20E-32 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00632 - - csv:101204978 290.812