Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00644 ATGCTTCTCCTCTTCTTCTTCTTCTTCTTCTTCACCTTCCTCTCAAACCCTTCTCTCCTCTCCTTCTCTCTAACCCAAGAAGGCCTTTACCTCCACACCATCAAGCTCTCCCTCGACGACCCAGATTCCTCCCTCCGTTCATGGAACGACCGCGACCACACTCCCTGCTCCTGGTACGGCGTCTCTTGCGACCCTCAAACCAACTCCGTCCACTCCCTCGACCTCTCCAACACCAACATCGCCGGCCCATTCCCCACCCTTCTCTGCCGCCTCCAGAATCTCTCATTCCTTTCCCTCTACAACAACTCCATCAACATGTCCCTTCCCTCTCTTATTTCAGATTGTTCCAGTCTCCAGCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTGCCGAGTTCGATTGCCGATCTCCCCAACCTTCGCTATTTGGATTTGACTGGGAATAACTTCTCCGGAGATGTTCCGCCTAGTTTCGCTCGGTTTCGGAAGTTGGAGGTTTTGTCTCTTGTTTTTAATATTCTCGATGGACCCATGCCGGCGTTTCTCGGTAATATTACGTCGTTGAAGATGTTGAACCTGTCTTACAACCCGTTTGCGCCGAGTCGGATCCCGCCGGAGTTTGGGAATTTGACGAATCTTGAGGTGCTTTGGGCGACTCAGTGTAATTTGATTGGGGAAATTCCGAACTCTCTTGGTCGGTTGAAGCGGCTTACTGATTTGGACTTGGCGTTGAATAATCTTTATGGTCCGATTCCAAGGTCGCTTACGGATTTGAGTAGCGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACCGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACCTCACTGCGACTGTTTGACGCGTCGATGAACAGTTTGACTGGGTCGATTCCGGATGAGCTGTGTCAGCTGCCGCTTGAGAGTCTTAATCTCTACGAGAACAAGTTTGAGGGGAAGTTACCGGAAAGCATTGCCAACTCGCCGGGTTTGTACGAACTCAGGCTGTTCAGTAACCGTCTCACTGGCGGTTTACCGCCAAATCTTGGAAAGAACTCGCCATTGAGATGGATTGATGTTTCTAACAACCAGTTTTCGGGGGAAATCCCGGGGGATTTGTGTGAGAAGGGAGCGTTGGAGGAACTTCTGATGATTAACAACCAGTTTTCCGGGGAGATCCCGGCGAGTTTAGGTGAGTGTAAAAGTCTCACGAGGGTGCGATTGGGTTACAATCGATTTTCCGGCGAGGTGCCGGCGGGTTTTTGGGGGCTCCCACATGTGTATTTGTTGGAGCTGGTGAGTAACTCATTTTCTGGGCATATTTCGGATGCCATAGCCACTGCGAAGAACCTTTCGATTTTCATCATCTCTAAGAACAACTTCACCGGCACATTACCGGCGGAGATGGGACGGCTGGACAATCTTGTAAAGTTGCTAGCGACTGATAACAAACTCAGTGGGTCATTACCAGGGAGTCTCGTGAATCTTGGGCATCTTTCGAGCTTGGATCTTCGAAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAGTCGTGGAAGAATCTGAACGAACTCAGTTTGGCAAACAATGGATTCACCGGCGAAATCCCTGAAGAAATCGGGGACTTGCCGGTTCTCAATTACCTTGATCTGTCGGGAAACATGTTTTCTGGGAACATCCCTGTCGGACTACAGAATTTGAAGCTCAATCTGCTCAATCTATCGAACAATCACTTGTCAGGTGAGCTTCCCCCATTTTTAGCTAAGGAAATCTACAGAAATAGCTTTTTAGGGAATCCAGATTTGTGTGGACATTTGGGAAGTTTGTGCAACAGCAAAGGTGAAGAAGCTAAAAGCGTAGGCTCTCTCTGGTTGTTGCTATCGATCTTCTTCCTCGCCGGTATCGTGTTTATCATCGGCGTCGTCTGGTTTTACCTCAAATACAGGAAGTTTAAGGCGGCAAAGAGAGAAATGGAGAAGGGGAAATGGACATTGATGTCCTTCCACAAGTTGGATTTCCGTGAATATGAGATCTTAGATTGTCTGGATGAAGATAACATCATAGGCAGTGGCTCTTCTGGTAAAGTTTACAAGGTTGTGCTCAACAATGGCGAGGCCGTTGCTGTTAAGAAGCTGTTCGGAGGGACGAGGAAAGAGGGCGAAAAAGGCGGCGATGTCGAGAAGGGTCAAGTTCTTCAAGACTATGGATTCGAAGCCGAAATCAATACTCTGGGAAAGATTAGGCATAAGAACATTGTGAAGTTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTGGTCTATGAATATATGGCTAATGGAAGCTTGGGAGATTTGCTTCATAGCAGTAAAAAAGGAGTGCTTGATTGGCCTACCAGGTTTAAGATAGCTTTAGATGCTGCAAAAGGACTCTCTTATCTTCATCACGATTGCACCCCTCCAATTGTTCATCGAGACGTTAAGTCGAACAATATCTTGTTGGATAGCGATTTTGGAGCACGGTTAGCCGATTTCGGCGTGGCCAAGGTCATCGATTCAACTGCGAAAGGGCCTAAATCCATGTCGGTAATCGCAGGATCTTGCGGTTATATCGCGCCTGAGTATGCTTACACACTCCGTGTCAACGAAAAAAGCGACATATACAGCTTCGGCGTGGTGATCCTGGAACTAATAACCGGGAGGCTCCCGATCGATCCAGTGTTCGGGGAGAAAGACCTGGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATCGACGAGGTGATCAACCCGAAACTGGATAAGTGTTTCAAGGAAGAAATATGCAGAGTGCTGAACATTGGGCTGCTATGCACCAGCCCTCTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGGAAGAAGTTGGGGCAGAGAACCAACTGAAAACCAACAATAAAGATGGGAAGCTAACTCCTTACTATTACCAAGATTCCTCTGATCAGGGAAGTGTAGCGTAG 3006 47.87 MLLLFFFFFFFTFLSNPSLLSFSLTQEGLYLHTIKLSLDDPDSSLRSWNDRDHTPCSWYGVSCDPQTNSVHSLDLSNTNIAGPFPTLLCRLQNLSFLSLYNNSINMSLPSLISDCSSLQHLDLSQNLLTGALPSSIADLPNLRYLDLTGNNFSGDVPPSFARFRKLEVLSLVFNILDGPMPAFLGNITSLKMLNLSYNPFAPSRIPPEFGNLTNLEVLWATQCNLIGEIPNSLGRLKRLTDLDLALNNLYGPIPRSLTDLSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNSLTGSIPDELCQLPLESLNLYENKFEGKLPESIANSPGLYELRLFSNRLTGGLPPNLGKNSPLRWIDVSNNQFSGEIPGDLCEKGALEELLMINNQFSGEIPASLGECKSLTRVRLGYNRFSGEVPAGFWGLPHVYLLELVSNSFSGHISDAIATAKNLSIFIISKNNFTGTLPAEMGRLDNLVKLLATDNKLSGSLPGSLVNLGHLSSLDLRNNELSGELPSGIKSWKNLNELSLANNGFTGEIPEEIGDLPVLNYLDLSGNMFSGNIPVGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFLGNPDLCGHLGSLCNSKGEEAKSVGSLWLLLSIFFLAGIVFIIGVVWFYLKYRKFKAAKREMEKGKWTLMSFHKLDFREYEILDCLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGTRKEGEKGGDVEKGQVLQDYGFEAEINTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMANGSLGDLLHSSKKGVLDWPTRFKIALDAAKGLSYLHHDCTPPIVHRDVKSNNILLDSDFGARLADFGVAKVIDSTAKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPIDPVFGEKDLVKWVCFTLDQDGIDEVINPKLDKCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLEEVGAENQLKTNNKDGKLTPYYYQDSSDQGSVA 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6856844 6860470 - CmoCh13G006440.1 Cmo13g00644 394699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00644 1001 Gene3D Ribonuclease Inhibitor 473 614 IPR032675 -
Cmo13g00644 1001 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Cmo13g00644 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Cmo13g00644 1001 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Cmo13g00644 1001 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Cmo13g00644 1001 SUPERFAMILY Protein kinase-like (PK-like) 680 969 IPR011009 -
Cmo13g00644 1001 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cmo13g00644 1001 Gene3D Ribonuclease Inhibitor 183 263 IPR032675 -
Cmo13g00644 1001 SUPERFAMILY L domain-like 34 373 - -
Cmo13g00644 1001 SMART serkin_6 686 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00644 1001 Pfam Protein kinase domain 688 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00644 1001 Gene3D Transferase(Phosphotransferase) domain 1 776 995 - -
Cmo13g00644 1001 ProSiteProfiles Protein kinase domain profile. 686 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00644 1001 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 981 - -
Cmo13g00644 1001 SMART LRR_typ_2 91 115 IPR003591 -
Cmo13g00644 1001 SMART LRR_typ_2 116 138 IPR003591 -
Cmo13g00644 1001 SMART LRR_typ_2 139 162 IPR003591 -
Cmo13g00644 1001 SMART LRR_typ_2 284 308 IPR003591 -
Cmo13g00644 1001 SMART LRR_typ_2 499 522 IPR003591 -
Cmo13g00644 1001 SMART LRR_typ_2 547 570 IPR003591 -
Cmo13g00644 1001 SMART LRR_typ_2 187 211 IPR003591 -
Cmo13g00644 1001 SMART LRR_typ_2 212 236 IPR003591 -
Cmo13g00644 1001 SUPERFAMILY RNI-like 241 600 - -
Cmo13g00644 1001 Gene3D Phosphorylase Kinase; domain 1 652 775 - -
Cmo13g00644 1001 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 10 981 - -
Cmo13g00644 1001 Gene3D Ribonuclease Inhibitor 264 374 IPR032675 -
Cmo13g00644 1001 Gene3D Ribonuclease Inhibitor 375 472 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01288 Cmo13g00644 CCT
Cmo13g00644 Cmo18g00374 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00599 Cmo-Chr9:2974990 Cmo13g00644 Cmo-Chr13:6856844 0 dispersed
Cmo12g00191 Cmo-Chr12:1254606 Cmo13g00644 Cmo-Chr13:6856844 0 dispersed
Cmo13g00644 Cmo-Chr13:6856844 Cmo19g00527 Cmo-Chr19:6163173 0 dispersed
Cmo04g00911 Cmo-Chr4:4582254 Cmo13g00644 Cmo-Chr13:6856844 0 transposed
Cmo11g01873 Cmo-Chr11:13048466 Cmo13g00644 Cmo-Chr13:6856844 0 transposed
Cmo13g00644 Cmo-Chr13:6856844 Cmo18g00374 Cmo-Chr18:2433680 0 wgd
Cmo13g00644 Cmo-Chr13:6856844 Cmo03g01288 Cmo-Chr3:9748626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74771 PF00069 Pkinase 1.30E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00644 - - csv:101213542 1748.41