Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00650 ATGGCTTCCACTCGCGAGGCTCACTACAGGGGCGTCAGAAAGAGGCCATGGGGTCGCTACGCCGCTGAGATTCGCGACCCTTGGAAGAAGACCCGTGTCTGGTTGGGCACTTTCGATACCCCTGAAGAAGCCGCCCTTGCTTACGACGGTGCCGCCAGGTCCCTCCGCGGCTCCAAAGCCAAGACCAACTTCCCTCCCCCTCTCTCCCTCGACCTCAACGTCTCCTCCACTCCTACAACCTGCAACTGGCCTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCCCTTCCTCCTCCTCCTCCTCCTCCGCCGCTCGTCTTCTCCTCGGCGATTTCCTCCGCCACGGCGCTCGCAACGACTTGTGTAATGTCAATGTGGAGGCCTCTCCGGGACTGGTGGACTCGAGCGATCCAGCGCCCAACACTACGGCGTCGTTTATGGGGCACGTGCGTCGTGGCCTCCCCTTTGATCTGAACGAGCCTCCTCCGGTGTGGCTATGA 501 63.27 MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLSLDLNVSSTPTTCNWPSSSSSSAAAAAPSSSSSSSAARLLLGDFLRHGARNDLCNVNVEASPGLVDSSDPAPNTTASFMGHVRRGLPFDLNEPPPVWL 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6895551 6896051 - CmoCh13G006500.1 Cmo13g00650 394705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00650 166 MobiDBLite consensus disorder prediction 75 99 - -
Cmo13g00650 166 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 154 - -
Cmo13g00650 166 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Cmo13g00650 166 CDD AP2 7 65 IPR001471 GO:0003700|GO:0006355
Cmo13g00650 166 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Cmo13g00650 166 Gene3D AP2/ERF domain 7 66 IPR036955 GO:0003700|GO:0006355
Cmo13g00650 166 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Cmo13g00650 166 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Cmo13g00650 166 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Cmo13g00650 166 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Cmo13g00650 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 1 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00592 Cmo-Chr8:3602712 Cmo13g00650 Cmo-Chr13:6895551 1.47E-26 dispersed
Cmo11g01992 Cmo-Chr11:13647284 Cmo13g00650 Cmo-Chr13:6895551 2.98E-33 dispersed
Cmo13g00650 Cmo-Chr13:6895551 Cmo02g00060 Cmo-Chr2:309781 1.42E-30 dispersed
Cmo13g00650 Cmo-Chr13:6895551 Cmo18g00367 Cmo-Chr18:2396343 2.10E-32 wgd
Cmo13g00650 Cmo-Chr13:6895551 Cmo19g01079 Cmo-Chr19:9303892 1.13E-30 wgd
Cmo13g00650 Cmo-Chr13:6895551 Cmo19g01038 Cmo-Chr19:9068532 1.54E-29 wgd
Cmo13g00650 Cmo-Chr13:6895551 Cmo09g00840 Cmo-Chr9:4302114 6.64E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10840 PF00847 AP2 1.80E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00650 - - csv:101212815 243.817